Gene loci information

Transcript annotation

  • This transcript has been annotated as Kinesin-like protein Klp10A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12901 g12901.t4 TSS g12901.t4 26789483 26789483
chr_1 g12901 g12901.t4 isoform g12901.t4 26789615 26797935
chr_1 g12901 g12901.t4 exon g12901.t4.exon1 26789615 26789669
chr_1 g12901 g12901.t4 cds g12901.t4.CDS1 26789615 26789669
chr_1 g12901 g12901.t4 exon g12901.t4.exon2 26793954 26794156
chr_1 g12901 g12901.t4 cds g12901.t4.CDS2 26793954 26794156
chr_1 g12901 g12901.t4 exon g12901.t4.exon3 26796026 26796092
chr_1 g12901 g12901.t4 cds g12901.t4.CDS3 26796026 26796092
chr_1 g12901 g12901.t4 exon g12901.t4.exon4 26797137 26797222
chr_1 g12901 g12901.t4 cds g12901.t4.CDS4 26797137 26797222
chr_1 g12901 g12901.t4 exon g12901.t4.exon5 26797292 26797524
chr_1 g12901 g12901.t4 cds g12901.t4.CDS5 26797292 26797524
chr_1 g12901 g12901.t4 exon g12901.t4.exon6 26797584 26797935
chr_1 g12901 g12901.t4 cds g12901.t4.CDS6 26797584 26797935
chr_1 g12901 g12901.t4 TTS g12901.t4 NA NA

Sequences

>g12901.t4 Gene=g12901 Length=996
ATGGAGGGCTGTTCGATTGAAGTCGGAAACAGTGTAAACATTAAACGAAGTGATGGCCGT
GTACATTCAGCAATGGTATCAAAGCTGAATCAAGCTCAGCGTTCAGTGACTGTGGAATGG
TATGAACGAGGCGAGACCAAAGGCAAAGAGGTTGAACTAGATATACTACTGGTATTAAAT
CCTGAACTTATTCAAAATAAGCAGTCAACCATCATTCAACCTTCATCTCAAATACAAGCA
CCAATTAACTTGCAACGAAATCAAACACAAGGAAATATACAAAGATTAACGCGAGCCAAT
AATACTTCAAGTGCAGCTCTAAATGGAAATCGAATCTCAAAAATTGGAACATCTACAACT
ATTCACAACAATCAGGATCATTCCGAAAACGTACCTCCACAGGCCAAGAAGGTTACAAAT
AATCGAATGTTAGTGACACAACAACAACAACAGACAAATCAACAACAGCAAGCAATGTCA
AAAGCAGCAGCATCACGACGCTCATATGTAGTTAGTGAAGTTGAACGATTAAAAGAGAAT
CGTGAAAAAAGACGTGCTCGACAATTGGAAATGAAAGAGGAAAAGACAGCTTTAATGAAT
ATGGATCCTGGTAATCCTAATTGGGAGCTTGCTGCTATGATTAGGGAATATCAATCGACA
ATAGATTTTCGGCCCTTAATTGATGGTCTAGCAATAGAAGATCATCAAATTACTGTTTGT
GTGAGAAAAAGACCATTGTCGAGAAAAGAAATTATGAAAAAAGAGCTAGATGTGATTTCG
GTTCCCTCAAAAGATACTTTGATTGTACACGAACCAAAAACAAAAGTCGACCTTACAAAG
TTCCTGGAGAATCACAATTTTCGATTCGATTATGCTTTCGATGATACCTGTAATAATGAG
TTGGTTTATAAGTATACGGCTAAACCTCTCGTACAGACTATTTTTGAAGGTGGTATGGCT
ACATGCTTTGCCTATGGACAAACCGGCTCAGGAAAA

>g12901.t4 Gene=g12901 Length=332
MEGCSIEVGNSVNIKRSDGRVHSAMVSKLNQAQRSVTVEWYERGETKGKEVELDILLVLN
PELIQNKQSTIIQPSSQIQAPINLQRNQTQGNIQRLTRANNTSSAALNGNRISKIGTSTT
IHNNQDHSENVPPQAKKVTNNRMLVTQQQQQTNQQQQAMSKAAASRRSYVVSEVERLKEN
REKRRARQLEMKEEKTALMNMDPGNPNWELAAMIREYQSTIDFRPLIDGLAIEDHQITVC
VRKRPLSRKEIMKKELDVISVPSKDTLIVHEPKTKVDLTKFLENHNFRFDYAFDDTCNNE
LVYKYTAKPLVQTIFEGGMATCFAYGQTGSGK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g12901.t4 Coils Coil Coil 174 194 -
5 g12901.t4 Gene3D G3DSA:3.40.850.10 Kinesin 206 332 2.1E-37
2 g12901.t4 PANTHER PTHR47971:SF14 KINESIN-LIKE PROTEIN 23 332 3.8E-73
3 g12901.t4 PANTHER PTHR47971 KINESIN-RELATED PROTEIN 6 23 332 3.8E-73
1 g12901.t4 Pfam PF00225 Kinesin motor domain 242 332 3.8E-16
7 g12901.t4 ProSiteProfiles PS50067 Kinesin motor domain profile. 236 332 32.859
4 g12901.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 208 332 2.39E-29

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:1990939 NA NA
GO:0007018 microtubule-based movement BP
GO:0005524 ATP binding MF
GO:0008017 microtubule binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values