General information for g12912.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.
Parent gene
- The parent gene g12912 is located on chr_1: 26869142..26870470 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12912 | g12912.t3 | TSS | g12912.t3 | 26867774 | 26867774 |
| chr_1 | g12912 | g12912.t3 | isoform | g12912.t3 | 26867852 | 26869646 |
| chr_1 | g12912 | g12912.t3 | exon | g12912.t3.exon1 | 26867852 | 26867928 |
| chr_1 | g12912 | g12912.t3 | exon | g12912.t3.exon2 | 26867984 | 26868279 |
| chr_1 | g12912 | g12912.t3 | exon | g12912.t3.exon3 | 26868340 | 26868460 |
| chr_1 | g12912 | g12912.t3 | exon | g12912.t3.exon4 | 26868518 | 26868731 |
| chr_1 | g12912 | g12912.t3 | cds | g12912.t3.CDS1 | 26868643 | 26868731 |
| chr_1 | g12912 | g12912.t3 | exon | g12912.t3.exon5 | 26868986 | 26869646 |
| chr_1 | g12912 | g12912.t3 | cds | g12912.t3.CDS2 | 26868986 | 26869142 |
| chr_1 | g12912 | g12912.t3 | TTS | g12912.t3 | NA | NA |
Sequences
>g12912.t3 Gene=g12912 Length=1369
AAGGCACTTGCAAGTATTTTGGAATCGATCTGCTGACTTGTGGCAACACTTGTGGGATCA
ATTTTTGGATTATGCAGGAGAAGATGAATTCACATTATTTGTATGGTGGACAACAATTTA
CACTTTTTGTATTTATTGGTTTTTTGGGGCCATCTACACAATTTTAGACATCACAAACAA
ACCAAAGTTTATTAGAAAATATAAAATTCAACCAAATACAAATGAACCATTGGATAAGAA
AAAATTGCGCCGAGTGATTTTACAAGTGATCTTCAATCAAATTTTTGTTGGCGTTCCATT
CGCAATTTTTTCTTATTACGCGCTAAAATTCAGAGGCTTTCCTGAAATTCGTGAACTTCC
AACTTTTCATTGGGTCCTATTTGAGCTTGGAATTTGTATTTTAGTGGAAGAATTTGGTTT
TTATTATTCGCATAGATTTTTACACAGCAAGCACATTTATAAAAGAATTCATAAGAAACA
TCATGAATGGCAAGCACCAGTCGCTGTAACTGCCATTTATGCCCATCCTATTGAACACAT
TTTTAGCAACATTCTTCCGCCTTTCCTTGGTGTCTTCATTTGTCGATCACATCTCGCAAC
AAGCTGGCTCTGGTTTACAATGGCATTGCTTTCTACTTTAAACGCTCATTCAGGCTATCA
TTTCCCGTTTTTTCCATCTCCTGAAGCGCATGATTTTCACCATTTCAAATTCAATTACAA
CTTTGGAATGCTTGGATTATTGGATAGAGTACATGGAACTGATTCACTATTTAGAATGTC
TCCACAAGGACAACGACATTTAATGCTTCTCTCATTTATTCCAGCACATGAGCAATTTCC
TGATAAACCAAAAAAATCATCGTAAAGTTATATATTAAAATAGATAAAAAATACTAGGAG
GTGTGTGAATGTCATGATGTAGAATAATGACCGAAACCTTTTACATACTCTTGTTTTTAT
TTTTGAACAATATTAAAAAATGCTACATAACACATTCGCACGCCTCGAACATGAATGACT
TAATCGCACTGGCACTGAAAATGAAAAATGCGTAATTTTAATGTGATGAAAAAAAGTAGT
GAAAAAGAAATAGGAAAGAAAAGAAGCAAACGAGTTAGTTAATCATGAATATATTTTAAT
TATATACATAACATTTTTAGTCTGTACAATTTGGATCTTTTGAGGGAGACAGAGTATATT
AATAAAAATGGATAACAAAAATAAAAACAAAGTCATTTATTTAATTTCTCATAGGTAGTC
TTATTATAAATGAAATATGATGACAAATAAGGAGAATTTTATCGATATTCTTTTCAGTTA
AGGCACTTGTCAATCTTCTCCTCCTTTAGGTAAATCTCACAATTAAATT
>g12912.t3 Gene=g12912 Length=81
MALLSTLNAHSGYHFPFFPSPEAHDFHHFKFNYNFGMLGLLDRVHGTDSLFRMSPQGQRH
LMLLSFIPAHEQFPDKPKKSS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g12912.t3 | PANTHER | PTHR11863:SF26 | FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 | 1 | 75 | 0 |
| g12912.t3 | PANTHER | PTHR11863 | STEROL DESATURASE | 1 | 75 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
