Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12944 g12944.t2 isoform g12944.t2 27090580 27091209
chr_1 g12944 g12944.t2 exon g12944.t2.exon1 27090580 27091209
chr_1 g12944 g12944.t2 TSS g12944.t2 27090582 27090582
chr_1 g12944 g12944.t2 cds g12944.t2.CDS1 27090832 27091209
chr_1 g12944 g12944.t2 TTS g12944.t2 NA NA

Sequences

>g12944.t2 Gene=g12944 Length=630
AGTAAACAATTAATATTAAACCACAAAAGAAGCTACAAGTGTTAAAAAAATGAAAATTAC
AGTAAATCCAATTTTTCTTTTGGTATTCATCATTTATCCACTTACAAGGATAATTGAAAT
TCTCACAAATACTGAGAAACATGGACCAAAATTTGGTGTTATATTGTCGATATTTTTGGA
GACAAACCTTTTAACATTTATTGCATTGCAACATTCCTTATTCCAATTTTTGGAATTTAT
TGGATTGTCGGAATGATTTATTTTGCTTTTGACTTCACATTGTCACCTAAAATGTTGAGG
AAATATAAAATACAAGAAGGTGCAAATGAACCTGTAGATTTATCAATGGTTTGGTACACT
ATCAAAACTGTAGTCTTCAATCAAGTTTTCATTAGTGGAGCAACACTTTACATCTCATAT
TTAATTAGAATGACAAAAGAAAATGCAAATGATTCACTCAAAATTACACCAAGCTTCTCA
AAAGTTGCAATGGATTTGATCATTTGTTACTTTGTTGATGAAGTGTTATTCTATTATGGT
CATCGACTTAGTCATACCAAATACTTGTATAAAAAAGTTCATAAACAACATCATGATTAT
ACTGCGCCAATTGCTATTGCTGCAATGGTA

>g12944.t2 Gene=g12944 Length=126
MIYFAFDFTLSPKMLRKYKIQEGANEPVDLSMVWYTIKTVVFNQVFISGATLYISYLIRM
TKENANDSLKITPSFSKVAMDLIICYFVDEVLFYYGHRLSHTKYLYKKVHKQHHDYTAPI
AIAAMV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12944.t2 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 3 125 6.2E-28
3 g12944.t2 PANTHER PTHR11863 STEROL DESATURASE 3 125 6.2E-28
1 g12944.t2 Pfam PF04116 Fatty acid hydroxylase superfamily 83 125 2.7E-8
6 g12944.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 39 -
7 g12944.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 40 58 -
4 g12944.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 59 77 -
8 g12944.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 78 96 -
5 g12944.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 97 126 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005506 iron ion binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values