Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12945 g12945.t9 isoform g12945.t9 27093185 27093986
chr_1 g12945 g12945.t9 exon g12945.t9.exon1 27093185 27093466
chr_1 g12945 g12945.t9 cds g12945.t9.CDS1 27093185 27093466
chr_1 g12945 g12945.t9 exon g12945.t9.exon2 27093527 27093662
chr_1 g12945 g12945.t9 cds g12945.t9.CDS2 27093527 27093662
chr_1 g12945 g12945.t9 exon g12945.t9.exon3 27093819 27093986
chr_1 g12945 g12945.t9 cds g12945.t9.CDS3 27093819 27093835
chr_1 g12945 g12945.t9 TTS g12945.t9 27094207 27094207
chr_1 g12945 g12945.t9 TSS g12945.t9 NA NA

Sequences

>g12945.t9 Gene=g12945 Length=586
ATGGTTTGGTACACTATCAAAACTGTAGTCTTCAATCAAGTTTTCATTAGTGGAGCAACA
CTTTACATCTCATATTTAATTAGAATGACAAAAGAAAATGTAAATGAGTCACTCAAAATT
ACACCAAGCTTCTCAAAAGTTGCAATGGATTTGATCATTTGCTTCTTTGTTGATGAAGTG
TTATTCTATTATGGTCATCGACTCGGGCACACTAAATACTTGTATAAAAAAGTTCACAAA
CAACATCACGATTATACTGCACCAATAGCTATTGCAGCATTACACTCAAGTCCAATTGAT
CATGTTCTTGCCAATATTCTACCAGTAGCACTTGGACCTATGATTACAAATAGTCACATT
AGTACAGCTTGGATTTGGTATATTGTTACTCAATTATTCGCTCTAAACAACCATTCAGTT
TCTTTTTATGAATAGGTTTGTCGAATGCTTTGGAAAAATGGGTCTACTTGATCGTCTTCA
TGGCACTGACAAAACTTTCCAAAAGACAATGCAAGGCATCAGACATCGCGTTCTATTCAC
AACAAAATCAGCACGAGAAATTTTTCCTGATAAGAAAGACAATTAA

>g12945.t9 Gene=g12945 Length=144
MVWYTIKTVVFNQVFISGATLYISYLIRMTKENVNESLKITPSFSKVAMDLIICFFVDEV
LFYYGHRLGHTKYLYKKVHKQHHDYTAPIAIAALHSSPIDHVLANILPVALGPMITNSHI
STAWIWYIVTQLFALNNHSVSFYE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12945.t9 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 3 139 1.1E-38
3 g12945.t9 PANTHER PTHR11863 STEROL DESATURASE 3 139 1.1E-38
1 g12945.t9 Pfam PF04116 Fatty acid hydroxylase superfamily 52 140 9.8E-16
7 g12945.t9 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 8 -
9 g12945.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 9 27 -
8 g12945.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 28 46 -
10 g12945.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 47 65 -
6 g12945.t9 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 66 144 -
5 g12945.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 9 27 -
4 g12945.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 47 66 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005506 iron ion binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed