Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12947 g12947.t14 TTS g12947.t14 27097147 27097147
chr_1 g12947 g12947.t14 isoform g12947.t14 27097557 27098516
chr_1 g12947 g12947.t14 exon g12947.t14.exon1 27097557 27097699
chr_1 g12947 g12947.t14 cds g12947.t14.CDS1 27097557 27097699
chr_1 g12947 g12947.t14 exon g12947.t14.exon2 27097767 27098183
chr_1 g12947 g12947.t14 cds g12947.t14.CDS2 27097767 27098183
chr_1 g12947 g12947.t14 exon g12947.t14.exon3 27098304 27098374
chr_1 g12947 g12947.t14 cds g12947.t14.CDS3 27098304 27098374
chr_1 g12947 g12947.t14 exon g12947.t14.exon4 27098434 27098516
chr_1 g12947 g12947.t14 cds g12947.t14.CDS4 27098434 27098516
chr_1 g12947 g12947.t14 TSS g12947.t14 27098545 27098545

Sequences

>g12947.t14 Gene=g12947 Length=714
ATGGATCTTAAAAATAGTCTTACAAGTTTTGATATTTTTCATCCATTGACATATTATATT
CCAATTATATATTTTATAACAAGAGTTTTGGAAAATTTTACAAACACAAGTAATTTTTGG
ACAAAAGTTTGGAATAAAATTGTCGATATTAACGATGACGACTACACTTTTAAACTATAT
GGCACAATTATTTATACCAGTTTAATTTATTGGATTGTTGGTTTGTTATATTTTTCAATG
GACGTAACACAGAAACCAAAATCTTTTCGTAAATATAAGACACAACCTGATGCAAATGAA
CCTCTTGATTATAAGAAAATTTTGTTGGCTTTACCTCTTGTACTTTTCAACCAACTTATA
CTTAATCCCATAGTAACATGTATTTTTGTGACAATTGGAAGGAAAACTTTATCAAGTGCT
CATATTCGCTACACAACAAGTTTTCAACAATTGATGATCGATATTATCGTGTATCAATTA
ATTTATGAAGCATGCTTTTATTATGCTCATCGATTATTTCACCATAAATATTTCTATGCA
AAAATTCACAAAGTTCATCATAAATTTACAGCACCCGTCTCTCTAATGGCAACCTATGCT
CATCCAATTGAACATATTTTTGCAAATATGCTTCCAATTGTCATTCCGATTTCATTACTA
AAATTACCAATTTCAACTAGTTGGATAGTTATGACATTGACAACAATCGCAACA

>g12947.t14 Gene=g12947 Length=238
MDLKNSLTSFDIFHPLTYYIPIIYFITRVLENFTNTSNFWTKVWNKIVDINDDDYTFKLY
GTIIYTSLIYWIVGLLYFSMDVTQKPKSFRKYKTQPDANEPLDYKKILLALPLVLFNQLI
LNPIVTCIFVTIGRKTLSSAHIRYTTSFQQLMIDIIVYQLIYEACFYYAHRLFHHKYFYA
KIHKVHHKFTAPVSLMATYAHPIEHIFANMLPIVIPISLLKLPISTSWIVMTLTTIAT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12947.t14 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 30 236 6.6E-42
3 g12947.t14 PANTHER PTHR11863 STEROL DESATURASE 30 236 6.6E-42
1 g12947.t14 Pfam PF04116 Fatty acid hydroxylase superfamily 156 236 3.1E-14
9 g12947.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
17 g12947.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 30 -
12 g12947.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 31 58 -
16 g12947.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 59 80 -
10 g12947.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 81 106 -
15 g12947.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 107 131 -
13 g12947.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 132 150 -
14 g12947.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 151 169 -
11 g12947.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 170 238 -
8 g12947.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
6 g12947.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 56 78 -
7 g12947.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 108 130 -
5 g12947.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 151 173 -
4 g12947.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 206 228 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005506 iron ion binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values