Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12947 g12947.t15 TTS g12947.t15 27097147 27097147
chr_1 g12947 g12947.t15 isoform g12947.t15 27097767 27098516
chr_1 g12947 g12947.t15 exon g12947.t15.exon1 27097767 27098183
chr_1 g12947 g12947.t15 cds g12947.t15.CDS1 27097768 27098183
chr_1 g12947 g12947.t15 exon g12947.t15.exon2 27098304 27098374
chr_1 g12947 g12947.t15 cds g12947.t15.CDS2 27098304 27098374
chr_1 g12947 g12947.t15 exon g12947.t15.exon3 27098434 27098516
chr_1 g12947 g12947.t15 cds g12947.t15.CDS3 27098434 27098516
chr_1 g12947 g12947.t15 TSS g12947.t15 27098545 27098545

Sequences

>g12947.t15 Gene=g12947 Length=571
ATGGATCTTAAAAATAGTCTTACAAGTTTTGATATTTTTCATCCATTGACATATTATATT
CCAATTATATATTTTATAACAAGAGTTTTGGAAAATTTTACAAACACAAGTAATTTTTGG
ACAAAAGTTTGGAATAAAATTGTCGATATTAACGATGACGACTACACTTTTAAACTATAT
GGCACAATTATTTATACCAGTTTAATTTATTGGATTGTTGGTTTGTTATATTTTTCAATG
GACGTAACACAGAAACCAAAATCTTTTCGTAAATATAAGACACAACCTGATGCAAATGAA
CCTCTTGATTATAAGAAAATTTTGTTGGCTTTACCTCTTGTACTTTTCAACCAACTTATA
CTTAATCCCATAGTAACATGTATTTTTGTGACAATTGGAAGGAAAACTTTATCAAGTGCT
CATATTCGCTACACAACAAGTTTTCAACAATTGATGATCGATATTATCGTGTATCAATTA
ATTTATGAAGCATGCTTTTATTATGCTCATCGATTATTTCACCATAAATATTTCTATGCA
AAAATTCACAAAGTTCATCATAAATTTACAG

>g12947.t15 Gene=g12947 Length=190
MDLKNSLTSFDIFHPLTYYIPIIYFITRVLENFTNTSNFWTKVWNKIVDINDDDYTFKLY
GTIIYTSLIYWIVGLLYFSMDVTQKPKSFRKYKTQPDANEPLDYKKILLALPLVLFNQLI
LNPIVTCIFVTIGRKTLSSAHIRYTTSFQQLMIDIIVYQLIYEACFYYAHRLFHHKYFYA
KIHKVHHKFT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g12947.t15 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 30 190 6.1E-27
2 g12947.t15 PANTHER PTHR11863 STEROL DESATURASE 30 190 6.1E-27
7 g12947.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
15 g12947.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 30 -
10 g12947.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 31 58 -
14 g12947.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 59 80 -
8 g12947.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 81 106 -
13 g12947.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 107 131 -
11 g12947.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 132 150 -
12 g12947.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 151 169 -
9 g12947.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 170 190 -
4 g12947.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 30 -
5 g12947.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 59 78 -
3 g12947.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 111 133 -
6 g12947.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 148 170 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed