Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12947 g12947.t4 TTS g12947.t4 27097147 27097147
chr_1 g12947 g12947.t4 isoform g12947.t4 27097224 27097696
chr_1 g12947 g12947.t4 exon g12947.t4.exon1 27097224 27097474
chr_1 g12947 g12947.t4 cds g12947.t4.CDS1 27097224 27097474
chr_1 g12947 g12947.t4 exon g12947.t4.exon2 27097541 27097696
chr_1 g12947 g12947.t4 cds g12947.t4.CDS2 27097541 27097685
chr_1 g12947 g12947.t4 TSS g12947.t4 27098545 27098545

Sequences

>g12947.t4 Gene=g12947 Length=407
CCGTCTCTCTAATGGCAACCTATGCTCATCCAATTGAACATATTTTTGCAAATATGCTTC
CAATTGTCATTCCGATTTCATTACTAAAATTACCAATTTCAACTAGTTGGATAGTTATGA
CATTGACAACAATCGCAACACTTGGAGATCATTCAGGATATCACTTACCTTTTCTACACA
GTCCTCAATTTCACGACTGGCATCACGCAAAATTTAGTGAATGTTATGGAGCAATGGGAA
TTTTAGATAAATTTCATGGGACGTCTAAAAATTTCGAGAAAGCCATCAACTCCATAAGAC
ATAGAACTATTTTTTCAATGAAATCAGTAGTGGAATTATATCCAGACGATTTAATAGAAA
AATCAAATATTGAAGCAAAAAATAGTGAAAATAAGAAAATTCAATAA

>g12947.t4 Gene=g12947 Length=131
MATYAHPIEHIFANMLPIVIPISLLKLPISTSWIVMTLTTIATLGDHSGYHLPFLHSPQF
HDWHHAKFSECYGAMGILDKFHGTSKNFEKAINSIRHRTIFSMKSVVELYPDDLIEKSNI
EAKNSENKKIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12947.t4 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 2 111 4.8E-34
3 g12947.t4 PANTHER PTHR11863 STEROL DESATURASE 2 111 4.8E-34
1 g12947.t4 Pfam PF04116 Fatty acid hydroxylase superfamily 2 84 4.0E-11
4 g12947.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005506 iron ion binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values