Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12947 g12947.t7 TTS g12947.t7 27097147 27097147
chr_1 g12947 g12947.t7 isoform g12947.t7 27097224 27098516
chr_1 g12947 g12947.t7 exon g12947.t7.exon1 27097224 27097474
chr_1 g12947 g12947.t7 cds g12947.t7.CDS1 27097224 27097474
chr_1 g12947 g12947.t7 exon g12947.t7.exon2 27097541 27097699
chr_1 g12947 g12947.t7 cds g12947.t7.CDS2 27097541 27097699
chr_1 g12947 g12947.t7 exon g12947.t7.exon3 27097767 27098183
chr_1 g12947 g12947.t7 cds g12947.t7.CDS3 27097767 27098183
chr_1 g12947 g12947.t7 exon g12947.t7.exon4 27098304 27098362
chr_1 g12947 g12947.t7 cds g12947.t7.CDS4 27098304 27098362
chr_1 g12947 g12947.t7 exon g12947.t7.exon5 27098434 27098516
chr_1 g12947 g12947.t7 cds g12947.t7.CDS5 27098434 27098516
chr_1 g12947 g12947.t7 TSS g12947.t7 27098545 27098545

Sequences

>g12947.t7 Gene=g12947 Length=969
ATGGATCTTAAAAATAGTCTTACAAGTTTTGATATTTTTCATCCATTGACATATTATATT
CCAATTATATATTTTATAACAAGTTTTACAAACACAAGTAATTTTTGGACAAAAGTTTGG
AATAAAATTGTCGATATTAACGATGACGACTACACTTTTAAACTATATGGCACAATTATT
TATACCAGTTTAATTTATTGGATTGTTGGTTTGTTATATTTTTCAATGGACGTAACACAG
AAACCAAAATCTTTTCGTAAATATAAGACACAACCTGATGCAAATGAACCTCTTGATTAT
AAGAAAATTTTGTTGGCTTTACCTCTTGTACTTTTCAACCAACTTATACTTAATCCCATA
GTAACATGTATTTTTGTGACAATTGGAAGGAAAACTTTATCAAGTGCTCATATTCGCTAC
ACAACAAGTTTTCAACAATTGATGATCGATATTATCGTGTATCAATTAATTTATGAAGCA
TGCTTTTATTATGCTCATCGATTATTTCACCATAAATATTTCTATGCAAAAATTCACAAA
GTTCATCATAAATTTACAGCACCCGTCTCTCTAATGGCAACCTATGCTCATCCAATTGAA
CATATTTTTGCAAATATGCTTCCAATTGTCATTCCGATTTCATTACTAAAATTACCAATT
TCAACTAGTTGGATAGTTATGACATTGACAACAATCGCAACACTTGGAGATCATTCAGGA
TATCACTTACCTTTTCTACACAGTCCTCAATTTCACGACTGGCATCACGCAAAATTTAGT
GAATGTTATGGAGCAATGGGAATTTTAGATAAATTTCATGGGACGTCTAAAAATTTCGAG
AAAGCCATCAACTCCATAAGACATAGAACTATTTTTTCAATGAAATCAGTAGTGGAATTA
TATCCAGACGATTTAATAGAAAAATCAAATATTGAAGCAAAAAATAGTGAAAATAAGAAA
ATTCAATAA

>g12947.t7 Gene=g12947 Length=322
MDLKNSLTSFDIFHPLTYYIPIIYFITSFTNTSNFWTKVWNKIVDINDDDYTFKLYGTII
YTSLIYWIVGLLYFSMDVTQKPKSFRKYKTQPDANEPLDYKKILLALPLVLFNQLILNPI
VTCIFVTIGRKTLSSAHIRYTTSFQQLMIDIIVYQLIYEACFYYAHRLFHHKYFYAKIHK
VHHKFTAPVSLMATYAHPIEHIFANMLPIVIPISLLKLPISTSWIVMTLTTIATLGDHSG
YHLPFLHSPQFHDWHHAKFSECYGAMGILDKFHGTSKNFEKAINSIRHRTIFSMKSVVEL
YPDDLIEKSNIEAKNSENKKIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12947.t7 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 26 302 3.9E-72
3 g12947.t7 PANTHER PTHR11863 STEROL DESATURASE 26 302 3.9E-72
1 g12947.t7 Pfam PF04116 Fatty acid hydroxylase superfamily 152 275 1.2E-22
13 g12947.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
16 g12947.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 32 -
9 g12947.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 33 52 -
15 g12947.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 53 74 -
12 g12947.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 75 102 -
17 g12947.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 103 126 -
11 g12947.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 127 146 -
19 g12947.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 147 165 -
14 g12947.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 166 201 -
18 g12947.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 202 220 -
10 g12947.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 221 322 -
8 g12947.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
4 g12947.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 53 75 -
7 g12947.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 104 126 -
5 g12947.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 147 169 -
6 g12947.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 202 224 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005506 iron ion binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values