Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fatty acid hydroxylase domain-containing protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12949 g12949.t32 TTS g12949.t32 27101637 27101637
chr_1 g12949 g12949.t32 isoform g12949.t32 27101708 27103122
chr_1 g12949 g12949.t32 exon g12949.t32.exon1 27101708 27102084
chr_1 g12949 g12949.t32 cds g12949.t32.CDS1 27101708 27102084
chr_1 g12949 g12949.t32 exon g12949.t32.exon2 27102140 27102158
chr_1 g12949 g12949.t32 cds g12949.t32.CDS2 27102140 27102158
chr_1 g12949 g12949.t32 exon g12949.t32.exon3 27102223 27102443
chr_1 g12949 g12949.t32 cds g12949.t32.CDS3 27102223 27102438
chr_1 g12949 g12949.t32 exon g12949.t32.exon4 27102702 27102853
chr_1 g12949 g12949.t32 exon g12949.t32.exon5 27103037 27103122
chr_1 g12949 g12949.t32 TSS g12949.t32 27103151 27103151

Sequences

>g12949.t32 Gene=g12949 Length=855
ATGACAGCAAGAATAAAAAAATCATTTTCTGATCTTGATGTGAATCCTTTACTTTATTGG
TTAACTTTGACTTATTTAATTACACGAACAATCGAAAAGTTCACAGGAACATCAGAATTT
TGGAGCAGTTTTTGGAATGGAATTATCGATTTTTTTGGTATGTTTACACAAAAGCTATGT
GAAGGTCATAAATGATTTAGCAAAGCTTTTTGTGTCTTAAATCAAAAATAGCTTTGTCCC
TTGATGGTTGTTATTTTCAATCAATTTATACTAAGTGGAATTGCAATTTATTGGACCTAC
AGATCAGGCGATTGGATGCTGTCAACCAATATTAGAGAGACTCCGACCTTCACAAGGTTA
ATTGCTGAAATTTTTGGCTTTGGTTTAACCTATGAATTTGTTTTTTATTATTCACATCGG
TTGCTTCATCACAAGAGTATTTATCAATACATTCACAAAGTTCATCATAAATGGCAAGCG
CCTGTGGCTTTAATGGCAGCATATTGTCACCCTATAGAACATATCGTCAGTAATCTTCTT
CCATTTATTATCAGTAATCTTCTCTTTCGTCATACATTAGCCACAACATGGGTCATTTAC
GCTGTAGCGATTATTTCGACTCTTGGTGACCACTCAGGATATCATTTGCCATTTCTTCAT
AGTCCACAATTTCATGATTACCATCACTTGAAATTTTTTGAAAATTTTGGATCAAATGGA
TTTATTGACAAATTTCATGGCACAAACAAGAAATTTGAAGAATCAATTCAAGGATTAAGA
CATAGAACTTTGTGGTCTTTAAAATCATCAAATGAATTATTTCCAGATGATAAAGTTACT
GAGAAAGAAAATTAA

>g12949.t32 Gene=g12949 Length=203
MVVIFNQFILSGIAIYWTYRSGDWMLSTNIRETPTFTRLIAEIFGFGLTYEFVFYYSHRL
LHHKSIYQYIHKVHHKWQAPVALMAAYCHPIEHIVSNLLPFIISNLLFRHTLATTWVIYA
VAIISTLGDHSGYHLPFLHSPQFHDYHHLKFFENFGSNGFIDKFHGTNKKFEESIQGLRH
RTLWSLKSSNELFPDDKVTEKEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g12949.t32 PANTHER PTHR11863:SF26 FATTY ACID HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2 2 195 7.8E-62
3 g12949.t32 PANTHER PTHR11863 STEROL DESATURASE 2 195 7.8E-62
1 g12949.t32 Pfam PF04116 Fatty acid hydroxylase superfamily 47 167 7.2E-19
5 g12949.t32 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2 19 -
6 g12949.t32 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 34 56 -
4 g12949.t32 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 106 128 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005506 iron ion binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed