General information for g12953.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Histone demethylase UTY.
Parent gene
- The parent gene g12953 is located on chr_1: 27134389..27138854 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12953 | g12953.t7 | TSS | g12953.t7 | 27134318 | 27134318 |
| chr_1 | g12953 | g12953.t7 | isoform | g12953.t7 | 27134389 | 27136526 |
| chr_1 | g12953 | g12953.t7 | exon | g12953.t7.exon1 | 27134389 | 27134410 |
| chr_1 | g12953 | g12953.t7 | exon | g12953.t7.exon2 | 27134639 | 27134785 |
| chr_1 | g12953 | g12953.t7 | cds | g12953.t7.CDS1 | 27134679 | 27134785 |
| chr_1 | g12953 | g12953.t7 | exon | g12953.t7.exon3 | 27134870 | 27135246 |
| chr_1 | g12953 | g12953.t7 | cds | g12953.t7.CDS2 | 27134870 | 27135246 |
| chr_1 | g12953 | g12953.t7 | exon | g12953.t7.exon4 | 27135523 | 27135853 |
| chr_1 | g12953 | g12953.t7 | cds | g12953.t7.CDS3 | 27135523 | 27135853 |
| chr_1 | g12953 | g12953.t7 | exon | g12953.t7.exon5 | 27135919 | 27136154 |
| chr_1 | g12953 | g12953.t7 | cds | g12953.t7.CDS4 | 27135919 | 27136154 |
| chr_1 | g12953 | g12953.t7 | exon | g12953.t7.exon6 | 27136324 | 27136526 |
| chr_1 | g12953 | g12953.t7 | cds | g12953.t7.CDS5 | 27136324 | 27136526 |
| chr_1 | g12953 | g12953.t7 | TTS | g12953.t7 | NA | NA |
Sequences
>g12953.t7 Gene=g12953 Length=1316
AAATATTAGATTTAGGTTTAAGACAAATTCATCAGCACCACCGCCTTATCCACAACAAGG
CAATGCAATTCCAGCAAAGAGATTTAAACATGGTGAGGACCAGCAGCAGCAACCACCAAT
TGCACGTCCTCCATTCTATCTTACCCCGCAACAACTTCAAATGCTTCAGGAAGGCGTTGC
AGAATACACCAAATCTTACGCCACAGCAACAAAATGCTTTGCAACAGCTGACACATCAAT
TTAAATTAATGCAACAACATCAACAGCAATTGAGATTACAGCAAGCACAGCTTCGTGGAG
GTGGATTGCCAATTCGAGGTCAACCACCGCAAGCTCAACAATTTCCACAACAAAATCCAA
CAAATTTTCCAACACAGCCAATTGGTAATAGAACACCACAATCAGGAACTACTGCACAAA
CTGGATTTATGAATGATGGAAGTTTTTCACCTGCAACTGGTCATTCACAAGCTGGCATGC
CATTTAAATCAGCTGGTGGTTTTCAACAACAGCAAATCACATCGACAACGAACAATCAAG
ATTTAAATGTAAGCGATCAAGAACTTCAAGCTTTGTTATCTCAACGTGATCTCACAACAA
CTTTTGCTGAAAATATTTTAAAACAAATTGAAAATGAAGAGCCAATTGATTCAAAAACCA
AATTGCATGAAACACTCAATGTAGATGCCATTAATCAACGAAATAATAAATCACCAACGA
TAAAATGCGAAGCGACATCAACATCGACGCAGGCTCTTTTAAATAAACATGACATAAAAT
CAGAGCCGGTTGTTAAAATTGAAAAATTGGTTGAGTTTGATAATAAAGTTGAATTCCATA
ATAAAATGACAGCAAAGGAAGTTTTTGAGACAGTAAAAAGAATGGATAACAGTGAATGTC
CATCAACGTGTTCAGTTTTGGCACTTGATTTACCACCACCTAGTCCACCTGAAAATCCAA
CACCACACCGTCTCACACGTGATCAACTTCTTCCACCAACTCCATCAGTATTTCTAGAAA
ATAAAAAACACGCGTTTAGTCCGCAGTTACAAGAATTTTGCTTAAAGCATCCAATTGCTG
TTGTTAGACAAATGGCATCAGCTTTAAAATTAGATTTGGGTTTATTTTCAACAAAAACCC
TTGTCGATACCGCACCAGAACAAACATGTGAAGTTAGAACACAGATGAATCAATCAGCTG
ATGAAAATTGGGATCCACAACATAAGGAACAAGTGTGGGCTTGCGTTTCACATCGATCTC
ATACAACAATCGCTAAATACGCTGCGTATCAAGCATCAACCTTTCATGAAAGCATC
>g12953.t7 Gene=g12953 Length=418
MQFQQRDLNMVRTSSSNHQLHVLHSILPRNNFKCFRKALQNTPNLTPQQQNALQQLTHQF
KLMQQHQQQLRLQQAQLRGGGLPIRGQPPQAQQFPQQNPTNFPTQPIGNRTPQSGTTAQT
GFMNDGSFSPATGHSQAGMPFKSAGGFQQQQITSTTNNQDLNVSDQELQALLSQRDLTTT
FAENILKQIENEEPIDSKTKLHETLNVDAINQRNNKSPTIKCEATSTSTQALLNKHDIKS
EPVVKIEKLVEFDNKVEFHNKMTAKEVFETVKRMDNSECPSTCSVLALDLPPPSPPENPT
PHRLTRDQLLPPTPSVFLENKKHAFSPQLQEFCLKHPIAVVRQMASALKLDLGLFSTKTL
VDTAPEQTCEVRTQMNQSADENWDPQHKEQVWACVSHRSHTTIAKYAAYQASTFHESI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g12953.t7 | Gene3D | G3DSA:2.60.120.650 | Cupin | 275 | 418 | 0 |
| 1 | g12953.t7 | PANTHER | PTHR14017:SF25 | HISTONE DEMETHYLASE UTY | 266 | 418 | 0 |
| 2 | g12953.t7 | PANTHER | PTHR14017 | LYSINE-SPECIFIC DEMETHYLASE | 266 | 418 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
