General information for g13013.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13013 is located on chr_1: 27502166..27502962 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13013 | g13013.t3 | TTS | g13013.t3 | 27501330 | 27501330 |
| chr_1 | g13013 | g13013.t3 | isoform | g13013.t3 | 27502166 | 27502962 |
| chr_1 | g13013 | g13013.t3 | exon | g13013.t3.exon1 | 27502166 | 27502780 |
| chr_1 | g13013 | g13013.t3 | cds | g13013.t3.CDS1 | 27502166 | 27502780 |
| chr_1 | g13013 | g13013.t3 | exon | g13013.t3.exon2 | 27502843 | 27502962 |
| chr_1 | g13013 | g13013.t3 | cds | g13013.t3.CDS2 | 27502843 | 27502962 |
| chr_1 | g13013 | g13013.t3 | TSS | g13013.t3 | 27503111 | 27503111 |
Sequences
>g13013.t3 Gene=g13013 Length=735
ATGTCGAAAAATGGATCAGAAAAAGGAAAACAAATGCGCCTTGATAACTTCTTTTCGAAA
AATAATTCGAACAATAACAAACCAGAAAATCAGTCAAAATTATCAATTAAAAAGAGAATA
AAAAGCTTTAATTTATCAGATGATGATTCTATCGAAACTCCTACAAAAATATTAAATGGT
TTCAATTGTTCAGAGATTAAAGAGAATCTCGATAATTTATCAAGAACTATGAATGAATCA
ACACCAACACCTGGAAGTGCCTCGAAATTTAAATTCAAAACAAGCTCTAATAAAGATCCT
CCATCGTCTTCAACCTCAAATACAATACAATCATTAGATTTGAATAGTGAACCGAAAAAA
AGCGTTTTTGGTAAACAATCACAATTTTTCATAAATGATGATAGCTTAGAAGATATTCTT
CCACTTAAAAAACCAACACAAAAGACAGAGAATATTATAAAACCTGAACCTTTATTTAGA
ATTAAAGGTAAAATAACAGAATCATCACAAAAAACATTTTTAAATGAAGACAAAAATTCA
CTTTTTAAGTCAAATCAAATTCAATTACTAACCAAACCACCAATTGAGAAAATTTTATTA
AATGAACGGGAAGTTAACATGACTTTTGCAAAAAGTGAAACAGCAGCATCTAATCAACCA
AAATCAACAAAAGACCAATTTGAGTTTCTCAATTCTGATATTGATAGTTCACCTCATCCA
GTTGTTGATTTAACA
>g13013.t3 Gene=g13013 Length=245
MSKNGSEKGKQMRLDNFFSKNNSNNNKPENQSKLSIKKRIKSFNLSDDDSIETPTKILNG
FNCSEIKENLDNLSRTMNESTPTPGSASKFKFKTSSNKDPPSSSTSNTIQSLDLNSEPKK
SVFGKQSQFFINDDSLEDILPLKKPTQKTENIIKPEPLFRIKGKITESSQKTFLNEDKNS
LFKSNQIQLLTKPPIEKILLNEREVNMTFAKSETAASNQPKSTKDQFEFLNSDIDSSPHP
VVDLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g13013.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - |
| 4 | g13013.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 31 | - |
| 2 | g13013.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 120 | - |
| 1 | g13013.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 245 | - |
| 5 | g13013.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 233 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed