General information for g13021.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Arylsulfatase B.
Parent gene
- The parent gene g13021 is located on chr_1: 27556080..27558072 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13021 | g13021.t1 | isoform | g13021.t1 | 27556080 | 27558072 |
| chr_1 | g13021 | g13021.t1 | exon | g13021.t1.exon1 | 27556080 | 27556091 |
| chr_1 | g13021 | g13021.t1 | cds | g13021.t1.CDS1 | 27556080 | 27556091 |
| chr_1 | g13021 | g13021.t1 | exon | g13021.t1.exon2 | 27556409 | 27556982 |
| chr_1 | g13021 | g13021.t1 | cds | g13021.t1.CDS2 | 27556409 | 27556982 |
| chr_1 | g13021 | g13021.t1 | exon | g13021.t1.exon3 | 27557239 | 27557294 |
| chr_1 | g13021 | g13021.t1 | cds | g13021.t1.CDS3 | 27557239 | 27557294 |
| chr_1 | g13021 | g13021.t1 | exon | g13021.t1.exon4 | 27557353 | 27558072 |
| chr_1 | g13021 | g13021.t1 | cds | g13021.t1.CDS4 | 27557353 | 27558072 |
| chr_1 | g13021 | g13021.t1 | TTS | g13021.t1 | 27558866 | 27558866 |
| chr_1 | g13021 | g13021.t1 | TSS | g13021.t1 | NA | NA |
Sequences
>g13021.t1 Gene=g13021 Length=1362
ATGAGTTTCATGGTGATTGTATCAGACGAACCATGGGGACTTCCATTAAATGAAAAAATA
ATGCCGCAATATTTCAAAGAAGCAGGCTATTCAACACATCTTATCGGTAAATGGCACTTG
GGATTATACAAAGAACCTTATACACCAATGCAACGTGGTTATGACACATTTTTCGGTTAT
CATGGTCCTTACATTGGTTATTTTGATTACACTCATAAAATGTTCACTCGAAATTATTCA
CGCGGTTACGATCTGCGTCGAAATGCAAATATAGAATGGAGAAATGATCGAGTTTATGCT
ACAGACATGTTTACAAAAGAAGCAGTAGCTGTCATTGAGAATCTTAATAATAAAAATCCA
TTTTTCATGATGGTCAATCATTTGGCACCGCATGCTGGAAATGAGGATGTTCCATTGGAA
GCTAAAGAAGAAGATATCAGACAATTTAGTTACATTAAAAATCCAAGGCGACAAATCTTG
AGTGCGATGGTAAAATCTTTGGATGACAGTGTTGGTGAAATTGTTTCGAGTTTAAGAAGG
AAAAATTTATTGGATGACACAATTATTATTTTCTATTCTGACAATGGTGGACCAACAGAA
TTTCTTCACGCGACAACAGCATCAAATTATCCATTGAAAGGTCAAAAACAATCAGGATGG
GAAGGTGGTATAAGAACAGCAGCAATAATTCATGCATCTTTCTTACCTCAAGGTGTCATA
AGAAATCGCTATTTTTACATTGCTGACTTTCTTCCAACACTTTTAACAATTTCAAATGCG
AATGTAAATATTAGTACACCAATTGATGGAATGGATTTATCAAATATGCTTATGAATGAT
CGACCACCATATAGAGATGAAGTGCTGACAATTGATGATGTTTTTGGGTATAGTTCATAT
ATTCGAGGTGATTTCAAATTAGTCAATGGAAGTTCTTCTGAAGATGGAATTGCTGATAAA
TGGCTTGGTTCTAACAACAACACAAACGTTAATGCAGCAAATTATGTTTTCAATGTTCTC
AATTCGAAAACGGCAAAAGCTCTAAAGTATTCGCTTACAGAAAGAAAAATTTCGTGTTTA
CGTAAGAGAACAGTTGTCAAGTGTGGTAACAATGTAGCCAATAACTGTAACTTGTTGGAA
GGACCGTGTCTTTTTAATATCATCAATGATCCGTGTGAAAAAGTTAATTTGGCAACTACG
CAGAAAGCGATGATGACCTCAATGCTCGAGAGCTTTAATGAGAAATTAAAAACAGTTGTT
CCAGCATTGAGAAAACCACCAAATCCCAATTGCGATCCAATATTTTTCAACCTAACTTGG
ACTAATTGGGATGATTATCCACCTCATATTTTGGATTTTTGA
>g13021.t1 Gene=g13021 Length=453
MSFMVIVSDEPWGLPLNEKIMPQYFKEAGYSTHLIGKWHLGLYKEPYTPMQRGYDTFFGY
HGPYIGYFDYTHKMFTRNYSRGYDLRRNANIEWRNDRVYATDMFTKEAVAVIENLNNKNP
FFMMVNHLAPHAGNEDVPLEAKEEDIRQFSYIKNPRRQILSAMVKSLDDSVGEIVSSLRR
KNLLDDTIIIFYSDNGGPTEFLHATTASNYPLKGQKQSGWEGGIRTAAIIHASFLPQGVI
RNRYFYIADFLPTLLTISNANVNISTPIDGMDLSNMLMNDRPPYRDEVLTIDDVFGYSSY
IRGDFKLVNGSSSEDGIADKWLGSNNNTNVNAANYVFNVLNSKTAKALKYSLTERKISCL
RKRTVVKCGNNVANNCNLLEGPCLFNIINDPCEKVNLATTQKAMMTSMLESFNEKLKTVV
PALRKPPNPNCDPIFFNLTWTNWDDYPPHILDF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g13021.t1 | CDD | cd16029 | 4-S | 1 | 310 | 1.68564E-125 |
| 6 | g13021.t1 | Gene3D | G3DSA:3.40.720.10 | Alkaline Phosphatase | 4 | 285 | 9.4E-93 |
| 7 | g13021.t1 | Gene3D | G3DSA:3.30.1120.10 | - | 286 | 413 | 9.4E-93 |
| 2 | g13021.t1 | PANTHER | PTHR10342 | ARYLSULFATASE | 3 | 447 | 2.2E-148 |
| 3 | g13021.t1 | PANTHER | PTHR10342:SF264 | MIP05773P | 3 | 447 | 2.2E-148 |
| 1 | g13021.t1 | Pfam | PF00884 | Sulfatase | 11 | 257 | 2.3E-38 |
| 5 | g13021.t1 | ProSitePatterns | PS00149 | Sulfatases signature 2. | 29 | 39 | - |
| 4 | g13021.t1 | SUPERFAMILY | SSF53649 | Alkaline phosphatase-like | 5 | 443 | 1.96E-80 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008484 | sulfuric ester hydrolase activity | MF |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed