Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Arylsulfatase B.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13021 g13021.t3 isoform g13021.t3 27554930 27557360
chr_1 g13021 g13021.t3 exon g13021.t3.exon1 27554930 27555182
chr_1 g13021 g13021.t3 exon g13021.t3.exon2 27555241 27555287
chr_1 g13021 g13021.t3 cds g13021.t3.CDS1 27555246 27555287
chr_1 g13021 g13021.t3 exon g13021.t3.exon3 27556409 27556982
chr_1 g13021 g13021.t3 cds g13021.t3.CDS2 27556409 27556982
chr_1 g13021 g13021.t3 exon g13021.t3.exon4 27557239 27557294
chr_1 g13021 g13021.t3 cds g13021.t3.CDS3 27557239 27557294
chr_1 g13021 g13021.t3 exon g13021.t3.exon5 27557353 27557360
chr_1 g13021 g13021.t3 cds g13021.t3.CDS4 27557353 27557358
chr_1 g13021 g13021.t3 TSS g13021.t3 NA NA
chr_1 g13021 g13021.t3 TTS g13021.t3 NA NA

Sequences

>g13021.t3 Gene=g13021 Length=938
AGTTTTAATTTAATCTTCATAAAATGAAGACACAAATTTTAATCCTCATAATTGTAGTTC
TCGAATTTTCTTCATCTTTACCACAAAATACAGAAGAAAAATTTTTATTATAGTAGCTGA
TGATCTTGGTTTCAATGATGTAAGTTATCGTGGCAGTAATGAGATTCAACTTATAATATC
GATGCATTGGCATATGGTGGAATTGTTCTTGACCGATTTTATACTGCTCCATTGTGCACT
CCATCACGAAGTGCATTGATGACTGGCAAATATCCTTTCCATACGGGAATGCAGAACTTA
GTGATTGTATCAGACGAACCATGGGGACTTCCATTAAATGAAAAAATAATGCCGCAATAT
TTCAAAGAAGCAGGCTATTCAACACATCTTATCGGTAAATGGCACTTGGGATTATACAAA
GAACCTTATACACCAATGCAACGTGGTTATGACACATTTTTCGGTTATCATGGTCCTTAC
ATTGGTTATTTTGATTACACTCATAAAATGTTCACTCGAAATTATTCACGCGGTTACGAT
CTGCGTCGAAATGCAAATATAGAATGGAGAAATGATCGAGTTTATGCTACAGACATGTTT
ACAAAAGAAGCAGTAGCTGTCATTGAGAATCTTAATAATAAAAATCCATTTTTCATGATG
GTCAATCATTTGGCACCGCATGCTGGAAATGAGGATGTTCCATTGGAAGCTAAAGAAGAA
GATATCAGACAATTTAGTTACATTAAAAATCCAAGGCGACAAATCTTGAGTGCGATGGTA
AAATCTTTGGATGACAGTGTTGGTGAAATTGTTTCGAGTTTAAGAAGGAAAAATTTATTG
GATGACACAATTATTATTTTCTATTCTGACAATGGTGGACCAACAGAATTTCTTCACGCG
ACAACAGCATCAAATTATCCATTGAAAGGTCAAAAACA

>g13021.t3 Gene=g13021 Length=226
MTGKYPFHTGMQNLVIVSDEPWGLPLNEKIMPQYFKEAGYSTHLIGKWHLGLYKEPYTPM
QRGYDTFFGYHGPYIGYFDYTHKMFTRNYSRGYDLRRNANIEWRNDRVYATDMFTKEAVA
VIENLNNKNPFFMMVNHLAPHAGNEDVPLEAKEEDIRQFSYIKNPRRQILSAMVKSLDDS
VGEIVSSLRRKNLLDDTIIIFYSDNGGPTEFLHATTASNYPLKGQK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g13021.t3 Gene3D G3DSA:3.40.720.10 Alkaline Phosphatase 1 226 7.7E-62
2 g13021.t3 PANTHER PTHR10342 ARYLSULFATASE 1 226 5.0E-102
3 g13021.t3 PANTHER PTHR10342:SF264 MIP05773P 1 226 5.0E-102
1 g13021.t3 Pfam PF00884 Sulfatase 1 226 7.7E-34
5 g13021.t3 ProSitePatterns PS00149 Sulfatases signature 2. 39 49 -
4 g13021.t3 SUPERFAMILY SSF53649 Alkaline phosphatase-like 1 226 4.94E-56

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008484 sulfuric ester hydrolase activity MF
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed