Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13022 g13022.t3 isoform g13022.t3 27560699 27561677
chr_1 g13022 g13022.t3 exon g13022.t3.exon1 27560699 27560703
chr_1 g13022 g13022.t3 exon g13022.t3.exon2 27560847 27560902
chr_1 g13022 g13022.t3 exon g13022.t3.exon3 27560961 27561677
chr_1 g13022 g13022.t3 cds g13022.t3.CDS1 27561129 27561677
chr_1 g13022 g13022.t3 TTS g13022.t3 27561908 27561908
chr_1 g13022 g13022.t3 TSS g13022.t3 NA NA

Sequences

>g13022.t3 Gene=g13022 Length=778
GGTAAGTGGACCAACAGAATTTCTTCTTTCGACAACAGCATCAAATTATCCATTGAAAGG
TCAAAAACAATCCGCATGGGAAGGTGGTATAAGAACAGCAGCAATAATCTATGCACCATT
TTTACCTCAGGGTGTCATAAGAAATCGCTATTTTTACATTGCTGACTTTCTTCCAACACT
TTTAACAATTTCAAATGCGAATGTAAATATTAGTACACCAATTGATGGAATGGATTTGTC
AAATATGCTTATGAATGATCGACCACCATATAGAGATGAAGTGTTGACAATTGATGATAT
TTTTGGGTATAGTTCATATATTCGAGGTGATTTCAAATTAGTCAATGGAAGTTCATCTGA
AGATGGAATTGCAGATAAATGGCTTGGTTCTAACAACAACACAAATGTCAATGCAGCAAA
GTACCTTTCTAATGTTCTCAATTCGAAAGTCGCAATCTCTCTTCAGTTTCCACTAACGGA
AAGAAAAATTTCGAGTTTACGTAAGAAAACGGTTGTCAAATGTGGTAACAATGTAGCCAA
TAATTGTAACTTGCTGAAGGGTCCATGTCTGTTTAATATCATCAATGATCCGTGTGAAAA
AGTTAATTTGGCAACTACGCAGAAAGCTAAGATGACCTCAATGCTTTTAAGGTTTAATCA
AAAATTAAAAACAGTTGTTCCGGCATTGAGAAAACCACCAAATCCCAATTGCGATCCAAT
ATTTTTCAATTTAACTTGGACTAATTGGGATGATTATCCACCTCATATAGTTATTTGA

>g13022.t3 Gene=g13022 Length=182
MDLSNMLMNDRPPYRDEVLTIDDIFGYSSYIRGDFKLVNGSSSEDGIADKWLGSNNNTNV
NAAKYLSNVLNSKVAISLQFPLTERKISSLRKKTVVKCGNNVANNCNLLKGPCLFNIIND
PCEKVNLATTQKAKMTSMLLRFNQKLKTVVPALRKPPNPNCDPIFFNLTWTNWDDYPPHI
VI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g13022.t3 PANTHER PTHR10342 ARYLSULFATASE 6 177 0
g13022.t3 PANTHER PTHR10342:SF264 MIP05773P 6 177 0
g13022.t3 SUPERFAMILY SSF53649 Alkaline phosphatase-like 2 173 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed