General information for g13028.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative aldehyde dehydrogenase family 7 member A1-like protein.
Parent gene
- The parent gene g13028 is located on chr_1: 27589461..27590538 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13028 | g13028.t8 | isoform | g13028.t8 | 27589461 | 27590153 |
| chr_1 | g13028 | g13028.t8 | exon | g13028.t8.exon1 | 27589461 | 27590153 |
| chr_1 | g13028 | g13028.t8 | cds | g13028.t8.CDS1 | 27589462 | 27590142 |
| chr_1 | g13028 | g13028.t8 | TSS | g13028.t8 | 27590232 | 27590232 |
| chr_1 | g13028 | g13028.t8 | TTS | g13028.t8 | NA | NA |
Sequences
>g13028.t8 Gene=g13028 Length=693
CTTATAGAGCAATGTCATCGTCACGTTATCTCATTGATGATCCAAATTTTTCTTTCCTAA
AAGAGCTCGGATTAGAACGAGTAAACAAAGGAGTTTATAATGGCGAATGGTGCGGTAGTG
GTGAGCTATCAAAATCTATTGATCCAGCAACAAACGAGGTTATCGCTGAAGTTCAAAATG
GAAGTGTTGATGATCTTGAAAGTTGCATAAAAACAGCTGAAGATGCATACAAACATTGGA
GAAATATGCCAGCTCCATTTAGAGGTGAAATTGTGAGACAAATTGGTGATGAATTGAGAA
AATATCGTGAACCACTTGGTAAACTTGTTTCACTCGAAATGGGAAAAATTCAAGCTGAAG
GGATTGGTGAAGTTCAGGAGTTTATCGACATTTGTGACTACGCAACTGGCTTATCACGAA
TGTTTGCTGGTCAAATCTTACCATCAGAACGCAATCAACATGTGATTATTGAAAAATGGA
ATCCACTTGGAATTGTTGGTATCATTTCAGCATTTAATTTTCCTAATGCAGTCTTTGGAT
GGAATGCTGCTATTGCTTTAGCAGTGGGAAATGTCTCTCTATGGAAAGGTGCACCATCAA
CTCCTCTTGTATCAATTGCAACAACAAAAATTGTCACTGAAGTCCTTAAACGCAATAATT
TACCACCGACTATTACTTTATGCCAAGGAGGAA
>g13028.t8 Gene=g13028 Length=227
MSSSRYLIDDPNFSFLKELGLERVNKGVYNGEWCGSGELSKSIDPATNEVIAEVQNGSVD
DLESCIKTAEDAYKHWRNMPAPFRGEIVRQIGDELRKYREPLGKLVSLEMGKIQAEGIGE
VQEFIDICDYATGLSRMFAGQILPSERNQHVIIEKWNPLGIVGIISAFNFPNAVFGWNAA
IALAVGNVSLWKGAPSTPLVSIATTKIVTEVLKRNNLPPTITLCQGG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13028.t8 | Gene3D | G3DSA:3.40.605.10 | Aldehyde Dehydrogenase; Chain A | 4 | 226 | 0 |
| 2 | g13028.t8 | PANTHER | PTHR43521 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE | 4 | 222 | 0 |
| 3 | g13028.t8 | PANTHER | PTHR43521:SF5 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE | 4 | 222 | 0 |
| 1 | g13028.t8 | Pfam | PF00171 | Aldehyde dehydrogenase family | 40 | 219 | 0 |
| 4 | g13028.t8 | SUPERFAMILY | SSF53720 | ALDH-like | 23 | 219 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
