General information for g13032.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13032 is located on chr_1: 27623777..27624648 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13032 | g13032.t1 | TSS | g13032.t1 | 27622555 | 27622555 |
| chr_1 | g13032 | g13032.t1 | isoform | g13032.t1 | 27622659 | 27623777 |
| chr_1 | g13032 | g13032.t1 | exon | g13032.t1.exon1 | 27622659 | 27622809 |
| chr_1 | g13032 | g13032.t1 | cds | g13032.t1.CDS1 | 27622659 | 27622809 |
| chr_1 | g13032 | g13032.t1 | exon | g13032.t1.exon2 | 27622891 | 27623777 |
| chr_1 | g13032 | g13032.t1 | cds | g13032.t1.CDS2 | 27622891 | 27623777 |
| chr_1 | g13032 | g13032.t1 | TTS | g13032.t1 | 27624142 | 27624142 |
Sequences
>g13032.t1 Gene=g13032 Length=1038
ATGAATGAGGATGTTAGTAAATCATTTCATTGTAAGGAAAGTGGTTGTGAAATGAGTTTC
TTTAATGAGCATAACTTGTCAGTGCATCATCAGTCGAAACATAGCAAATTAAATTTAGAA
ATTCCATCAAAAGATATAACAATAAATTTTTCAACTGATTTGACACCGACACCAACTAAA
TTTTTGAACAAGTGTGAAGAATTGAGAGTTTTTGAAGATCCATACATCCAGAACATAAAT
CCATTTGATGAAGGATTTCGTAATGCAATTGACAATCGCAATGGAGGATTTTTGTCTGTA
TCACCAACAACAGCAACCAATCAAGACACTTTACATACACCACAAATTATCCCTGATTTT
ATAACAAGAAATATTAAAGATGAAAGAATTCCTGTGGATCTACCAATGCAAGATGAACCA
GAAAATCTTTCAACAACACCTGATGTCATTCCTAACATTCCGAAAATTACAATTAGTGAG
CCTATTCCGTTGCTGCCGAAACCAAACATTATTTATGCTGCACCACTTATAACAGCAACT
AAATCAAATGAAACTGTAAAAGATCGATTGAAAAATATTATATTGAGCAATAATAATGGT
CCAACTACAACCACAGTAACCTCAATAGCTCATGAAAGTCATAAACGAATAAAACTTGAC
ACAACAGACACAAAATTGAATCTTCCTGCAATATTAATTCAAACTGTGCCACTTATTGCA
CCTACAAATGTTATCAAACTTAAAATTAATGACACAAAGTCAACAGTTGATTTAAAAAAG
GACAATGGTGATAACAGTACAAAGAAAAAATCAACAAGTAATAAAAGTGACTCAGCTGCC
TTAAAAGTTGAAAGAAATCGTGCAGCAGCGCGAAGATATCGACATAAAATGAAGCAACAA
AGTCAGGCATTAAGGGAAAAATATGATAAAAGTTTGAAGGAAATTGCTCAATTGAAAAAG
GATATCACAGAATTGAAGAAATTACTTTTGCTGCATAAAGATTGCGAAGTGACGAAACGA
TTGAATTTGACGAATTAA
>g13032.t1 Gene=g13032 Length=345
MNEDVSKSFHCKESGCEMSFFNEHNLSVHHQSKHSKLNLEIPSKDITINFSTDLTPTPTK
FLNKCEELRVFEDPYIQNINPFDEGFRNAIDNRNGGFLSVSPTTATNQDTLHTPQIIPDF
ITRNIKDERIPVDLPMQDEPENLSTTPDVIPNIPKITISEPIPLLPKPNIIYAAPLITAT
KSNETVKDRLKNIILSNNNGPTTTTVTSIAHESHKRIKLDTTDTKLNLPAILIQTVPLIA
PTNVIKLKINDTKSTVDLKKDNGDNSTKKKSTSNKSDSAALKVERNRAAARRYRHKMKQQ
SQALREKYDKSLKEIAQLKKDITELKKLLLLHKDCEVTKRLNLTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13032.t1 | Coils | Coil | Coil | 294 | 328 | - |
| 5 | g13032.t1 | Gene3D | G3DSA:1.20.5.170 | - | 265 | 335 | 1.6E-6 |
| 9 | g13032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 282 | - |
| 2 | g13032.t1 | PANTHER | PTHR19304:SF5 | ACTIVATING TRANSCRIPTION FACTOR-2 | 7 | 339 | 7.0E-21 |
| 3 | g13032.t1 | PANTHER | PTHR19304 | CYCLIC-AMP RESPONSE ELEMENT BINDING PROTEIN | 7 | 339 | 7.0E-21 |
| 1 | g13032.t1 | Pfam | PF07716 | Basic region leucine zipper | 276 | 327 | 4.4E-5 |
| 7 | g13032.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 11 | 34 | - |
| 8 | g13032.t1 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 282 | 296 | - |
| 10 | g13032.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 9 | 39 | 8.6 |
| 4 | g13032.t1 | SUPERFAMILY | SSF57959 | Leucine zipper domain | 276 | 329 | 1.63E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K04450 (cyclic AMP-dependent transcription factor ATF-2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
