General information for g13083.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13083 is located on chr_1: 27860602..27862364 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13083 | g13083.t6 | isoform | g13083.t6 | 27860602 | 27862364 |
| chr_1 | g13083 | g13083.t6 | exon | g13083.t6.exon1 | 27860602 | 27862364 |
| chr_1 | g13083 | g13083.t6 | cds | g13083.t6.CDS1 | 27861285 | 27862364 |
| chr_1 | g13083 | g13083.t6 | TTS | g13083.t6 | 27862419 | 27862419 |
| chr_1 | g13083 | g13083.t6 | TSS | g13083.t6 | NA | NA |
Sequences
>g13083.t6 Gene=g13083 Length=1763
AAGATGTGTCAAGTTCACGAGTATGTCAATTAAATGGAGGCACAGTTAATTCATTAAGTC
TTGATGAAATTGTACAGGAAACATTCAATACAATTGAACGAAATACAAGCAAATTATTGA
GAATTGAGGGCAAATGCGTGCTAAATAATAATATAAAAAATTTAGGTATAACAGTAACGA
AACTTGAAGACCAAAATGCACCTTCCACCAATAAAATTCAAAATTTATTGAAAAATCATG
CAAAAAAGTCACCAAAAGTAAAAGCTTCAACATCAAAAAGAACTCGTGTGAGTAATGTTA
CGGAAAATATCGAAAACCCTAAAAACGATGAAAGCAACGCATATGAAGTAGAAAAAGATC
AAAAGATTATTCAGCAATATAGCAATGAAGACATTTTTTCTGAAATTGATAATCAACCAA
GTGAATTTGAATTAGTGGCCGGAAGTGAATTTTTCAAAGATTTCATTAAAGGTGAGAAGA
CTTTACGACACTGGCTTCAGCAAATTTTAATTAAACTCAATGAAGATATTCGAGAGAAAT
GTTCAAAGGAAAAGGTTGGGCCTAAAAATATTCAACTACTATGGCGACAATTAATTGGTA
ATGATGAAAGAAACTTCGCAGAAACAATCCCTTTGAATATATTCACAAACAATTCCATCA
AAGTAGAATTTCTTTATAATGTTATGAATGATTCAACTAAAGAATTTTCCACAAACGAAA
TTTTAAATCCAATTAGTTTGATTGAAATTAAGGCAATCGACTTTGAAACAAGACACTCGG
AATGGAATTTAACAGTCGAAAAGTCAATCTATGAGAATGAGGTAGTGGAGGAAAATGAAG
AAACTTATTCAACAGAAAATAAAGAAGAAGAGGAAGAGGGTAAAACGCAAATAGAACATG
ACATTGTAAAACACAATATTCAGGGAAATAGTCGAGAGAATGACATTGAAATGGATTTGC
AAAATGACATTGAACCTTATTTGAATAATCAGGAAACAAAACAAGACAATATTGACAATG
ATGAAGACCTTAAAGAGCTAGAAAATGCATATCAAAGTTTCAGTAACGAAATTGATAACC
CTCCATTGAATAATATTGAAGAGAATTTGAAAACTGATTCAGATCAATTGAATGATACTG
TGATAGATATAAAAACAGATGATGCTAAGAGCATGCCATGTATTAAAGTAAAAAGTGCAG
AAGAGTTAGGAGTCGCTAGTACCTCATATATGCAAACGTATGCAGAATTTCAACAAAATC
CAATCATAGATACATTGAATCCACTTGAAGAATGTTTAGAATGTGGAAAGATGATAAGAA
AATTCGATATGCTTACTCATATTGATGGTCACATTGCAATGCAAATTTCTATGTCACAAC
GTGAAGAGTATCGAGCCGAGCAAAAACGAAAGTTATTAAACCAAACAATTGTAAAGAGTG
CGAAAAAGAGTATAGACAAAGCTACTAAATCAAAAATAAATATCAGTAGTCTGTCAATTG
AAAAATTTGTGAAGAAACCACATCAGGATGAAAATTTAGAAGTATCAAATGAAAAAGAAT
TATGTTTAGAATGCAACACATTAATTTCAAAAGAAGACATCATCACACATCAAGATTATC
ATTTTGCGCAAAAACTGAGAATGGAGCAGCTAAAATCAACAACAATTACAAAAAAAACAC
CTGGTACTTCAAAAAATAAAAGACCGCTTACTCAAAATGATAATAAAAAGGTAAAAAGTT
TAAGAGCGTATTTTACAGAATAG
>g13083.t6 Gene=g13083 Length=359
MNDSTKEFSTNEILNPISLIEIKAIDFETRHSEWNLTVEKSIYENEVVEENEETYSTENK
EEEEEGKTQIEHDIVKHNIQGNSRENDIEMDLQNDIEPYLNNQETKQDNIDNDEDLKELE
NAYQSFSNEIDNPPLNNIEENLKTDSDQLNDTVIDIKTDDAKSMPCIKVKSAEELGVAST
SYMQTYAEFQQNPIIDTLNPLEECLECGKMIRKFDMLTHIDGHIAMQISMSQREEYRAEQ
KRKLLNQTIVKSAKKSIDKATKSKINISSLSIEKFVKKPHQDENLEVSNEKELCLECNTL
ISKEDIITHQDYHFAQKLRMEQLKSTTITKKTPGTSKNKRPLTQNDNKKVKSLRAYFTE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13083.t6 | Coils | Coil | Coil | 45 | 65 | - |
| 5 | g13083.t6 | Coils | Coil | Coil | 102 | 122 | - |
| 3 | g13083.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 69 | - |
| 2 | g13083.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 341 | - |
| 4 | g13083.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 349 | - |
| 1 | g13083.t6 | Pfam | PF18439 | Ubiquitin-Binding Zinc Finger | 292 | 320 | 9.6E-8 |
| 7 | g13083.t6 | ProSiteProfiles | PS51907 | Zinc finger UBZ3-type profile. | 287 | 321 | 14.907 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
