Gene loci information

Transcript annotation

  • This transcript has been annotated as Moesin/ezrin/radixin homolog 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13085 g13085.t1 TSS g13085.t1 27870377 27870377
chr_1 g13085 g13085.t1 isoform g13085.t1 27870839 27878596
chr_1 g13085 g13085.t1 exon g13085.t1.exon1 27870839 27870859
chr_1 g13085 g13085.t1 cds g13085.t1.CDS1 27870839 27870859
chr_1 g13085 g13085.t1 exon g13085.t1.exon2 27871590 27871769
chr_1 g13085 g13085.t1 cds g13085.t1.CDS2 27871590 27871769
chr_1 g13085 g13085.t1 exon g13085.t1.exon3 27876246 27877400
chr_1 g13085 g13085.t1 cds g13085.t1.CDS3 27876246 27877400
chr_1 g13085 g13085.t1 exon g13085.t1.exon4 27878146 27878367
chr_1 g13085 g13085.t1 cds g13085.t1.CDS4 27878146 27878367
chr_1 g13085 g13085.t1 exon g13085.t1.exon5 27878432 27878596
chr_1 g13085 g13085.t1 cds g13085.t1.CDS5 27878432 27878596
chr_1 g13085 g13085.t1 TTS g13085.t1 27878931 27878931

Sequences

>g13085.t1 Gene=g13085 Length=1743
ATGGTGTCTGGAAATAAAATGCTAAATGTTCGCGTTACGACGATGGATGCAGAGTTGGAA
TTTGCCATCCAACAAAGCACCACAGGCAAGCAGCTTTTCGATCAAGTTGTTAAGACAATT
GGCCTTCGAGAAGTTTGGTTCTTCGGTCTTCAGTATACAGATCCGAAAGGCGATTTGACA
TGGATTAAACTTTATAAGAAGGTGATGAGTCAAGATATTCAAAAGACGGATCCATTGCAG
TTCAAATTCCGTGCAAAGTTCTATCCAGAAGATGTTGCCGAAGAGCTCATTCAGGATATT
ACACTTCGACTGTTTTATTTGCAAGTTAAGAATGCAATTTTGTCTGATGAAATTTACTGT
CCGCCCGAAACTTCAGTACTTCTTGCATCATATGCCGTTCAAGCGCGTCATGGTGATTTC
AATAAAGGAACACATGGCCCTGGTTTCTTAGTAAACGATAGATTACTTCCACAACGCGTC
ATCGATCAGCATAAAATGTCGAAAGACGAATGGGAAACTTCTATAATTACTTGGTGGCAA
GAACATCGTGGCATGTTGCGCGAAGACGCAATGATGGAATATTTGAAAATTGCTCAGGAT
TTAGAGATGTATGGTGTCAATTACTTTGAAATTCGCAATAAAAAAGGAACCGAATTATAT
CTTGGAGTCGATGCGTTGGGTTTGAACATTTATGAAAAAGACGATAAACTGACGCCTAAA
ATTGGCTTCCCATGGTCAGAAATTCGTAATATATCATTTAATGATAAGAAATTCATCATC
AAACCTATTGACAAGAAGGCGCCAGATTTTGTCTTCTTCGCACCACGTGTTCGTATCAAT
AAGCGCATTCTTGCACTGTGTATGGGTAATCATGAGCTTTATATGCGTCGTAGAAAACCT
GATACCATCGATGTTCAGCAAATGAAGGCACAAGCTCGTGAAGAAAAGAATGCTAAACAG
CAAGAGCGTGAAAAACTTCAATTGGCACTTGCAGCAAGAGAACGTGCAGAAAAGAAACAG
CAAGAGTACGAAGATCGCTTACGTACAATGCAAGAAGAAATCAATCGTTCACAAGCTAAC
TTAATGGAAGCTCAAGAGATGATAAGACGTTTAGAAGAGCAGTTAAAACAATTGCAGCTA
TCGAAAGATGAACTTGAGCAGCGTCAGAATGAATTGCAAGAAATGCTTACTCGTTTGGAA
GAAAGCAAAAACATGGAAGCAGCAGAACGTCAGAAATTGGAAGAAGAAATTTCTGCAAAA
CAAATCGAAGTGGCCAAGATTCAAGAAGAAGTCGAAGCAAAGGATTCCGAAACAAGACGA
TTACAAGAAGAGGTTGAAGAAGCACGCCGCAAACAGCAAGAAGCAGCTGCAGCACTTTTG
GCAGCTACACAAACACCTAAACATCATCATTTGGCTGAAGATGAAAATGGAGATGATGAT
GATATGACGAATGGAGATAATGGATCTGGTGGCGGAGATGTATCAAGAGATTTAGATACA
GATATGGATATCAAAGATCCAATTGAAGATAGACGTACATTAGCTGAACGTAATGAAAGA
TTACACGATCAATTGAAGGCATTAAAACAAGATTTGGCACAATCTCGTGACGATACAAAA
GAGACTGCCAATGATAAAATCCATAGAGAAAATGTACGTCAGGGACGTGACAAATATAAG
ACATTGCGTGAAATAAGAAAAGGAAACACCAAACGTCGTGTGGATCAGTTTGAAAACATG
TAA

>g13085.t1 Gene=g13085 Length=580
MVSGNKMLNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDPKGDLT
WIKLYKKVMSQDIQKTDPLQFKFRAKFYPEDVAEELIQDITLRLFYLQVKNAILSDEIYC
PPETSVLLASYAVQARHGDFNKGTHGPGFLVNDRLLPQRVIDQHKMSKDEWETSIITWWQ
EHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKGTELYLGVDALGLNIYEKDDKLTPK
IGFPWSEIRNISFNDKKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMRRRKP
DTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLRTMQEEINRSQAN
LMEAQEMIRRLEEQLKQLQLSKDELEQRQNELQEMLTRLEESKNMEAAERQKLEEEISAK
QIEVAKIQEEVEAKDSETRRLQEEVEEARRKQQEAAAALLAATQTPKHHHLAEDENGDDD
DMTNGDNGSGGGDVSRDLDTDMDIKDPIEDRRTLAERNERLHDQLKALKQDLAQSRDDTK
ETANDKIHRENVRQGRDKYKTLREIRKGNTKRRVDQFENM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
32 g13085.t1 CDD cd17187 FERM_F1_ERM 8 90 1.2724E-51
31 g13085.t1 CDD cd14473 FERM_B-lobe 101 201 1.15441E-29
33 g13085.t1 CDD cd13194 FERM_C_ERM 203 299 4.79764E-71
29 g13085.t1 Coils Coil Coil 305 458 -
28 g13085.t1 Coils Coil Coil 511 545 -
23 g13085.t1 Gene3D G3DSA:3.10.20.90 - 7 85 3.5E-37
27 g13085.t1 Gene3D G3DSA:1.20.80.10 - 86 202 5.1E-39
24 g13085.t1 Gene3D G3DSA:2.30.29.30 - 204 302 8.4E-47
26 g13085.t1 Gene3D G3DSA:1.20.5.450 - 303 490 2.5E-76
25 g13085.t1 Gene3D G3DSA:1.25.40.1020 - 499 580 6.9E-36
38 g13085.t1 MobiDBLite mobidb-lite consensus disorder prediction 432 453 -
40 g13085.t1 MobiDBLite mobidb-lite consensus disorder prediction 432 558 -
39 g13085.t1 MobiDBLite mobidb-lite consensus disorder prediction 496 558 -
5 g13085.t1 PANTHER PTHR23281:SF18 MOESIN/EZRIN/RADIXIN HOMOLOG 1 6 580 1.5E-278
6 g13085.t1 PANTHER PTHR23281 MERLIN/MOESIN/EZRIN/RADIXIN 6 580 1.5E-278
30 g13085.t1 PIRSF PIRSF002305 ERM 1 580 1.1E-280
13 g13085.t1 PRINTS PR00661 ERM family signature 20 39 1.5E-87
7 g13085.t1 PRINTS PR00935 Band 4.1 protein family signature 40 52 9.8E-29
18 g13085.t1 PRINTS PR00661 ERM family signature 72 91 1.5E-87
10 g13085.t1 PRINTS PR00935 Band 4.1 protein family signature 107 120 9.8E-29
15 g13085.t1 PRINTS PR00661 ERM family signature 116 137 1.5E-87
9 g13085.t1 PRINTS PR00935 Band 4.1 protein family signature 120 140 9.8E-29
16 g13085.t1 PRINTS PR00661 ERM family signature 162 179 1.5E-87
8 g13085.t1 PRINTS PR00935 Band 4.1 protein family signature 189 205 9.8E-29
12 g13085.t1 PRINTS PR00661 ERM family signature 212 232 1.5E-87
14 g13085.t1 PRINTS PR00661 ERM family signature 287 306 1.5E-87
11 g13085.t1 PRINTS PR00661 ERM family signature 535 556 1.5E-87
17 g13085.t1 PRINTS PR00661 ERM family signature 557 578 1.5E-87
4 g13085.t1 Pfam PF09379 FERM N-terminal domain 12 71 9.1E-15
3 g13085.t1 Pfam PF00373 FERM central domain 96 209 3.3E-24
2 g13085.t1 Pfam PF09380 FERM C-terminal PH-like domain 213 301 1.1E-25
1 g13085.t1 Pfam PF00769 Ezrin/radixin/moesin family 334 580 2.3E-70
37 g13085.t1 ProSitePatterns PS00660 FERM domain signature 1. 61 91 -
36 g13085.t1 ProSitePatterns PS00661 FERM domain signature 2. 179 208 -
41 g13085.t1 ProSiteProfiles PS50057 FERM domain profile. 8 298 81.393
35 g13085.t1 SMART SM00295 B41_5 4 209 1.3E-80
34 g13085.t1 SMART SM01196 FERM_C_3 213 302 3.8E-36
21 g13085.t1 SUPERFAMILY SSF54236 Ubiquitin-like 5 90 1.03E-24
22 g13085.t1 SUPERFAMILY SSF47031 Second domain of FERM 92 201 4.06E-38
19 g13085.t1 SUPERFAMILY SSF50729 PH domain-like 202 345 3.38E-41
20 g13085.t1 SUPERFAMILY SSF48678 Moesin tail domain 499 580 1.96E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005856 cytoskeleton CC
GO:0003779 actin binding MF
GO:0008092 cytoskeletal protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values