Gene loci information

Transcript annotation

  • This transcript has been annotated as Moesin/ezrin/radixin homolog 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13085 g13085.t11 TSS g13085.t11 27865974 27865974
chr_1 g13085 g13085.t11 isoform g13085.t11 27866963 27877394
chr_1 g13085 g13085.t11 exon g13085.t11.exon1 27866963 27867178
chr_1 g13085 g13085.t11 cds g13085.t11.CDS1 27867167 27867178
chr_1 g13085 g13085.t11 exon g13085.t11.exon2 27871590 27871769
chr_1 g13085 g13085.t11 cds g13085.t11.CDS2 27871590 27871769
chr_1 g13085 g13085.t11 exon g13085.t11.exon3 27876246 27877394
chr_1 g13085 g13085.t11 cds g13085.t11.CDS3 27876246 27877394
chr_1 g13085 g13085.t11 TTS g13085.t11 NA NA

Sequences

>g13085.t11 Gene=g13085 Length=1545
ATTTATTAATTTTGATATTCTTTTTTAAACGGAATATACAAAAATACGATATAAAGTCTC
ATCACTAGCAGCAGCAGTTCATCGCCACGAAAATCGCGAGAGAAACTTTTTACATTAAAA
ACGAAAATTACGCGATTTCTCAGTTGAATAAATAATAAATTTTCAAAGATCCGCAGCTGA
ATTAAAAAAAAAAACAGAATCATCATGCCAAAATCACTAAATGTTCGCGTTACGACGATG
GATGCAGAGTTGGAATTTGCCATCCAACAAAGCACCACAGGCAAGCAGCTTTTCGATCAA
GTTGTTAAGACAATTGGCCTTCGAGAAGTTTGGTTCTTCGGTCTTCAGTATACAGATCCG
AAAGGCGATTTGACATGGATTAAACTTTATAAGAAGGTGATGAGTCAAGATATTCAAAAG
ACGGATCCATTGCAGTTCAAATTCCGTGCAAAGTTCTATCCAGAAGATGTTGCCGAAGAG
CTCATTCAGGATATTACACTTCGACTGTTTTATTTGCAAGTTAAGAATGCAATTTTGTCT
GATGAAATTTACTGTCCGCCCGAAACTTCAGTACTTCTTGCATCATATGCCGTTCAAGCG
CGTCATGGTGATTTCAATAAAGGAACACATGGCCCTGGTTTCTTAGTAAACGATAGATTA
CTTCCACAACGCGTCATCGATCAGCATAAAATGTCGAAAGACGAATGGGAAACTTCTATA
ATTACTTGGTGGCAAGAACATCGTGGCATGTTGCGCGAAGACGCAATGATGGAATATTTG
AAAATTGCTCAGGATTTAGAGATGTATGGTGTCAATTACTTTGAAATTCGCAATAAAAAA
GGAACCGAATTATATCTTGGAGTCGATGCGTTGGGTTTGAACATTTATGAAAAAGACGAT
AAACTGACGCCTAAAATTGGCTTCCCATGGTCAGAAATTCGTAATATATCATTTAATGAT
AAGAAATTCATCATCAAACCTATTGACAAGAAGGCGCCAGATTTTGTCTTCTTCGCACCA
CGTGTTCGTATCAATAAGCGCATTCTTGCACTGTGTATGGGTAATCATGAGCTTTATATG
CGTCGTAGAAAACCTGATACCATCGATGTTCAGCAAATGAAGGCACAAGCTCGTGAAGAA
AAGAATGCTAAACAGCAAGAGCGTGAAAAACTTCAATTGGCACTTGCAGCAAGAGAACGT
GCAGAAAAGAAACAGCAAGAGTACGAAGATCGCTTACGTACAATGCAAGAAGAAATCAAT
CGTTCACAAGCTAACTTAATGGAAGCTCAAGAGATGATAAGACGTTTAGAAGAGCAGTTA
AAACAATTGCAGCTATCGAAAGATGAACTTGAGCAGCGTCAGAATGAATTGCAAGAAATG
CTTACTCGTTTGGAAGAAAGCAAAAACATGGAAGCAGCAGAACGTCAGAAATTGGAAGAA
GAAATTTCTGCAAAACAAATCGAAGTGGCCAAGATTCAAGAAGAAGTCGAAGCAAAGGAT
TCCGAAACAAGACGATTACAAGAAGAGGTTGAAGAAGCACGCCGC

>g13085.t11 Gene=g13085 Length=447
MPKSLNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDPKGDLTWIK
LYKKVMSQDIQKTDPLQFKFRAKFYPEDVAEELIQDITLRLFYLQVKNAILSDEIYCPPE
TSVLLASYAVQARHGDFNKGTHGPGFLVNDRLLPQRVIDQHKMSKDEWETSIITWWQEHR
GMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKGTELYLGVDALGLNIYEKDDKLTPKIGF
PWSEIRNISFNDKKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMRRRKPDTI
DVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLRTMQEEINRSQANLME
AQEMIRRLEEQLKQLQLSKDELEQRQNELQEMLTRLEESKNMEAAERQKLEEEISAKQIE
VAKIQEEVEAKDSETRRLQEEVEEARR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
26 g13085.t11 CDD cd17187 FERM_F1_ERM 5 87 2.74492E-52
25 g13085.t11 CDD cd14473 FERM_B-lobe 98 198 7.53604E-30
27 g13085.t11 CDD cd13194 FERM_C_ERM 200 296 9.07768E-73
24 g13085.t11 Coils Coil Coil 302 444 -
20 g13085.t11 Gene3D G3DSA:3.10.20.90 - 4 82 2.0E-37
23 g13085.t11 Gene3D G3DSA:1.20.80.10 - 83 199 3.3E-39
21 g13085.t11 Gene3D G3DSA:2.30.29.30 - 201 299 5.5E-47
22 g13085.t11 Gene3D G3DSA:1.20.5.450 - 300 447 1.2E-60
32 g13085.t11 MobiDBLite mobidb-lite consensus disorder prediction 428 447 -
5 g13085.t11 PANTHER PTHR23281:SF18 MOESIN/EZRIN/RADIXIN HOMOLOG 1 1 446 1.9E-242
6 g13085.t11 PANTHER PTHR23281 MERLIN/MOESIN/EZRIN/RADIXIN 1 446 1.9E-242
15 g13085.t11 PRINTS PR00661 ERM family signature 17 36 1.8E-64
10 g13085.t11 PRINTS PR00935 Band 4.1 protein family signature 37 49 3.9E-29
13 g13085.t11 PRINTS PR00661 ERM family signature 69 88 1.8E-64
8 g13085.t11 PRINTS PR00935 Band 4.1 protein family signature 104 117 3.9E-29
11 g13085.t11 PRINTS PR00661 ERM family signature 113 134 1.8E-64
9 g13085.t11 PRINTS PR00935 Band 4.1 protein family signature 117 137 3.9E-29
14 g13085.t11 PRINTS PR00661 ERM family signature 159 176 1.8E-64
7 g13085.t11 PRINTS PR00935 Band 4.1 protein family signature 186 202 3.9E-29
12 g13085.t11 PRINTS PR00661 ERM family signature 209 229 1.8E-64
16 g13085.t11 PRINTS PR00661 ERM family signature 284 303 1.8E-64
4 g13085.t11 Pfam PF09379 FERM N-terminal domain 9 68 6.3E-15
3 g13085.t11 Pfam PF00373 FERM central domain 93 206 2.1E-24
2 g13085.t11 Pfam PF09380 FERM C-terminal PH-like domain 210 298 7.1E-26
1 g13085.t11 Pfam PF00769 Ezrin/radixin/moesin family 331 447 2.8E-20
31 g13085.t11 ProSitePatterns PS00660 FERM domain signature 1. 58 88 -
30 g13085.t11 ProSitePatterns PS00661 FERM domain signature 2. 176 205 -
33 g13085.t11 ProSiteProfiles PS50057 FERM domain profile. 5 295 81.393
29 g13085.t11 SMART SM00295 B41_5 1 206 6.0E-81
28 g13085.t11 SMART SM01196 FERM_C_3 210 299 3.8E-36
18 g13085.t11 SUPERFAMILY SSF54236 Ubiquitin-like 2 87 8.89E-25
19 g13085.t11 SUPERFAMILY SSF47031 Second domain of FERM 89 198 2.62E-38
17 g13085.t11 SUPERFAMILY SSF50729 PH domain-like 199 342 2.15E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005856 cytoskeleton CC
GO:0008092 cytoskeletal protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values