Gene loci information

Transcript annotation

  • This transcript has been annotated as Moesin/ezrin/radixin homolog 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13085 g13085.t14 TSS g13085.t14 27870377 27870377
chr_1 g13085 g13085.t14 isoform g13085.t14 27870839 27876755
chr_1 g13085 g13085.t14 exon g13085.t14.exon1 27870839 27870859
chr_1 g13085 g13085.t14 cds g13085.t14.CDS1 27870839 27870859
chr_1 g13085 g13085.t14 exon g13085.t14.exon2 27871590 27871769
chr_1 g13085 g13085.t14 cds g13085.t14.CDS2 27871590 27871769
chr_1 g13085 g13085.t14 exon g13085.t14.exon3 27876246 27876755
chr_1 g13085 g13085.t14 cds g13085.t14.CDS3 27876246 27876755
chr_1 g13085 g13085.t14 TTS g13085.t14 NA NA

Sequences

>g13085.t14 Gene=g13085 Length=711
ATGGTGTCTGGAAATAAAATGCTAAATGTTCGCGTTACGACGATGGATGCAGAGTTGGAA
TTTGCCATCCAACAAAGCACCACAGGCAAGCAGCTTTTCGATCAAGTTGTTAAGACAATT
GGCCTTCGAGAAGTTTGGTTCTTCGGTCTTCAGTATACAGATCCGAAAGGCGATTTGACA
TGGATTAAACTTTATAAGAAGGTGATGAGTCAAGATATTCAAAAGACGGATCCATTGCAG
TTCAAATTCCGTGCAAAGTTCTATCCAGAAGATGTTGCCGAAGAGCTCATTCAGGATATT
ACACTTCGACTGTTTTATTTGCAAGTTAAGAATGCAATTTTGTCTGATGAAATTTACTGT
CCGCCCGAAACTTCAGTACTTCTTGCATCATATGCCGTTCAAGCGCGTCATGGTGATTTC
AATAAAGGAACACATGGCCCTGGTTTCTTAGTAAACGATAGATTACTTCCACAACGCGTC
ATCGATCAGCATAAAATGTCGAAAGACGAATGGGAAACTTCTATAATTACTTGGTGGCAA
GAACATCGTGGCATGTTGCGCGAAGACGCAATGATGGAATATTTGAAAATTGCTCAGGAT
TTAGAGATGTATGGTGTCAATTACTTTGAAATTCGCAATAAAAAAGGAACCGAATTATAT
CTTGGAGTCGATGCGTTGGGTTTGAACATTTATGAAAAAGACGATAAACTG

>g13085.t14 Gene=g13085 Length=237
MVSGNKMLNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDPKGDLT
WIKLYKKVMSQDIQKTDPLQFKFRAKFYPEDVAEELIQDITLRLFYLQVKNAILSDEIYC
PPETSVLLASYAVQARHGDFNKGTHGPGFLVNDRLLPQRVIDQHKMSKDEWETSIITWWQ
EHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKGTELYLGVDALGLNIYEKDDKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
21 g13085.t14 CDD cd17187 FERM_F1_ERM 8 90 1.52437E-55
20 g13085.t14 CDD cd14473 FERM_B-lobe 101 201 1.50032E-33
17 g13085.t14 Gene3D G3DSA:3.10.20.90 - 7 85 7.7E-38
19 g13085.t14 Gene3D G3DSA:1.20.80.10 - 86 202 8.4E-40
18 g13085.t14 Gene3D G3DSA:2.30.29.30 - 204 237 8.2E-12
3 g13085.t14 PANTHER PTHR23281:SF18 MOESIN/EZRIN/RADIXIN HOMOLOG 1 6 237 2.6E-138
4 g13085.t14 PANTHER PTHR23281 MERLIN/MOESIN/EZRIN/RADIXIN 6 237 2.6E-138
12 g13085.t14 PRINTS PR00661 ERM family signature 20 39 1.0E-52
5 g13085.t14 PRINTS PR00935 Band 4.1 protein family signature 40 52 4.9E-30
13 g13085.t14 PRINTS PR00661 ERM family signature 72 91 1.0E-52
8 g13085.t14 PRINTS PR00935 Band 4.1 protein family signature 107 120 4.9E-30
10 g13085.t14 PRINTS PR00661 ERM family signature 116 137 1.0E-52
7 g13085.t14 PRINTS PR00935 Band 4.1 protein family signature 120 140 4.9E-30
11 g13085.t14 PRINTS PR00661 ERM family signature 162 179 1.0E-52
6 g13085.t14 PRINTS PR00935 Band 4.1 protein family signature 189 205 4.9E-30
9 g13085.t14 PRINTS PR00661 ERM family signature 212 232 1.0E-52
2 g13085.t14 Pfam PF09379 FERM N-terminal domain 12 71 2.3E-15
1 g13085.t14 Pfam PF00373 FERM central domain 96 209 5.3E-25
23 g13085.t14 ProSitePatterns PS00660 FERM domain signature 1. 61 91 -
22 g13085.t14 ProSitePatterns PS00661 FERM domain signature 2. 179 208 -
25 g13085.t14 ProSiteProfiles PS50057 FERM domain profile. 8 237 69.784
24 g13085.t14 SMART SM00295 B41_5 4 209 1.3E-80
15 g13085.t14 SUPERFAMILY SSF54236 Ubiquitin-like 5 90 2.07E-25
16 g13085.t14 SUPERFAMILY SSF47031 Second domain of FERM 92 201 6.8E-39
14 g13085.t14 SUPERFAMILY SSF50729 PH domain-like 202 236 1.63E-8

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005856 cytoskeleton CC
GO:0008092 cytoskeletal protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed