Gene loci information

Transcript annotation

  • This transcript has been annotated as Moesin/ezrin/radixin homolog 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13085 g13085.t15 TSS g13085.t15 27870377 27870377
chr_1 g13085 g13085.t15 isoform g13085.t15 27870839 27877057
chr_1 g13085 g13085.t15 exon g13085.t15.exon1 27870839 27870863
chr_1 g13085 g13085.t15 exon g13085.t15.exon2 27871590 27871769
chr_1 g13085 g13085.t15 cds g13085.t15.CDS1 27871611 27871769
chr_1 g13085 g13085.t15 exon g13085.t15.exon3 27876246 27877057
chr_1 g13085 g13085.t15 cds g13085.t15.CDS2 27876246 27877055
chr_1 g13085 g13085.t15 TTS g13085.t15 NA NA

Sequences

>g13085.t15 Gene=g13085 Length=1017
ATGGTGTCTGGAAATAAAATGGTTACTAAATGTTCGCGTTACGACGATGGATGCAGAGTT
GGAATTTGCCATCCAACAAAGCACCACAGGCAAGCAGCTTTTCGATCAAGTTGTTAAGAC
AATTGGCCTTCGAGAAGTTTGGTTCTTCGGTCTTCAGTATACAGATCCGAAAGGCGATTT
GACATGGATTAAACTTTATAAGAAGGTGATGAGTCAAGATATTCAAAAGACGGATCCATT
GCAGTTCAAATTCCGTGCAAAGTTCTATCCAGAAGATGTTGCCGAAGAGCTCATTCAGGA
TATTACACTTCGACTGTTTTATTTGCAAGTTAAGAATGCAATTTTGTCTGATGAAATTTA
CTGTCCGCCCGAAACTTCAGTACTTCTTGCATCATATGCCGTTCAAGCGCGTCATGGTGA
TTTCAATAAAGGAACACATGGCCCTGGTTTCTTAGTAAACGATAGATTACTTCCACAACG
CGTCATCGATCAGCATAAAATGTCGAAAGACGAATGGGAAACTTCTATAATTACTTGGTG
GCAAGAACATCGTGGCATGTTGCGCGAAGACGCAATGATGGAATATTTGAAAATTGCTCA
GGATTTAGAGATGTATGGTGTCAATTACTTTGAAATTCGCAATAAAAAAGGAACCGAATT
ATATCTTGGAGTCGATGCGTTGGGTTTGAACATTTATGAAAAAGACGATAAACTGACGCC
TAAAATTGGCTTCCCATGGTCAGAAATTCGTAATATATCATTTAATGATAAGAAATTCAT
CATCAAACCTATTGACAAGAAGGCGCCAGATTTTGTCTTCTTCGCACCACGTGTTCGTAT
CAATAAGCGCATTCTTGCACTGTGTATGGGTAATCATGAGCTTTATATGCGTCGTAGAAA
ACCTGATACCATCGATGTTCAGCAAATGAAGGCACAAGCTCGTGAAGAAAAGAATGCTAA
ACAGCAAGAGCGTGAAAAACTTCAATTGGCACTTGCAGCAAGAGAACGTGCAGAAAA

>g13085.t15 Gene=g13085 Length=323
MDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDPKGDLTWIKLYKKVMSQDIQ
KTDPLQFKFRAKFYPEDVAEELIQDITLRLFYLQVKNAILSDEIYCPPETSVLLASYAVQ
ARHGDFNKGTHGPGFLVNDRLLPQRVIDQHKMSKDEWETSIITWWQEHRGMLREDAMMEY
LKIAQDLEMYGVNYFEIRNKKGTELYLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFN
DKKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMRRRKPDTIDVQQMKAQARE
EKNAKQQEREKLQLALAARERAE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
24 g13085.t15 CDD cd14473 FERM_B-lobe 87 187 3.49714E-32
25 g13085.t15 CDD cd13194 FERM_C_ERM 189 285 1.49774E-72
23 g13085.t15 Coils Coil Coil 291 323 -
19 g13085.t15 Gene3D G3DSA:3.10.20.90 - 1 71 2.9E-33
22 g13085.t15 Gene3D G3DSA:1.20.80.10 - 72 188 1.7E-39
20 g13085.t15 Gene3D G3DSA:2.30.29.30 - 190 285 3.0E-47
21 g13085.t15 Gene3D G3DSA:1.20.5.450 - 286 323 4.3E-18
4 g13085.t15 PANTHER PTHR23281:SF18 MOESIN/EZRIN/RADIXIN HOMOLOG 1 1 323 4.1E-200
5 g13085.t15 PANTHER PTHR23281 MERLIN/MOESIN/EZRIN/RADIXIN 1 323 4.1E-200
11 g13085.t15 PRINTS PR00661 ERM family signature 6 25 3.5E-65
9 g13085.t15 PRINTS PR00935 Band 4.1 protein family signature 26 38 1.3E-29
15 g13085.t15 PRINTS PR00661 ERM family signature 58 77 3.5E-65
6 g13085.t15 PRINTS PR00935 Band 4.1 protein family signature 93 106 1.3E-29
12 g13085.t15 PRINTS PR00661 ERM family signature 102 123 3.5E-65
7 g13085.t15 PRINTS PR00935 Band 4.1 protein family signature 106 126 1.3E-29
14 g13085.t15 PRINTS PR00661 ERM family signature 148 165 3.5E-65
8 g13085.t15 PRINTS PR00935 Band 4.1 protein family signature 175 191 1.3E-29
10 g13085.t15 PRINTS PR00661 ERM family signature 198 218 3.5E-65
13 g13085.t15 PRINTS PR00661 ERM family signature 273 292 3.5E-65
3 g13085.t15 Pfam PF09379 FERM N-terminal domain 3 57 1.1E-14
2 g13085.t15 Pfam PF00373 FERM central domain 82 195 1.1E-24
1 g13085.t15 Pfam PF09380 FERM C-terminal PH-like domain 199 287 4.0E-26
29 g13085.t15 ProSitePatterns PS00660 FERM domain signature 1. 47 77 -
28 g13085.t15 ProSitePatterns PS00661 FERM domain signature 2. 165 194 -
30 g13085.t15 ProSiteProfiles PS50057 FERM domain profile. 1 284 79.762
27 g13085.t15 SMART SM00295 B41_5 1 195 2.3E-71
26 g13085.t15 SMART SM01196 FERM_C_3 199 288 3.8E-36
17 g13085.t15 SUPERFAMILY SSF54236 Ubiquitin-like 2 76 1.8E-22
18 g13085.t15 SUPERFAMILY SSF47031 Second domain of FERM 78 187 1.44E-38
16 g13085.t15 SUPERFAMILY SSF50729 PH domain-like 188 316 7.38E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005856 cytoskeleton CC
GO:0008092 cytoskeletal protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed