Gene loci information

Transcript annotation

  • This transcript has been annotated as Moesin/ezrin/radixin homolog 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13085 g13085.t16 isoform g13085.t16 27871588 27877394
chr_1 g13085 g13085.t16 exon g13085.t16.exon1 27871588 27871769
chr_1 g13085 g13085.t16 TSS g13085.t16 27871589 27871589
chr_1 g13085 g13085.t16 cds g13085.t16.CDS1 27871611 27871769
chr_1 g13085 g13085.t16 exon g13085.t16.exon2 27876246 27877394
chr_1 g13085 g13085.t16 cds g13085.t16.CDS2 27876246 27877394
chr_1 g13085 g13085.t16 TTS g13085.t16 NA NA

Sequences

>g13085.t16 Gene=g13085 Length=1331
AGCTAAATGTTCGCGTTACGACGATGGATGCAGAGTTGGAATTTGCCATCCAACAAAGCA
CCACAGGCAAGCAGCTTTTCGATCAAGTTGTTAAGACAATTGGCCTTCGAGAAGTTTGGT
TCTTCGGTCTTCAGTATACAGATCCGAAAGGCGATTTGACATGGATTAAACTTTATAAGA
AGGTGATGAGTCAAGATATTCAAAAGACGGATCCATTGCAGTTCAAATTCCGTGCAAAGT
TCTATCCAGAAGATGTTGCCGAAGAGCTCATTCAGGATATTACACTTCGACTGTTTTATT
TGCAAGTTAAGAATGCAATTTTGTCTGATGAAATTTACTGTCCGCCCGAAACTTCAGTAC
TTCTTGCATCATATGCCGTTCAAGCGCGTCATGGTGATTTCAATAAAGGAACACATGGCC
CTGGTTTCTTAGTAAACGATAGATTACTTCCACAACGCGTCATCGATCAGCATAAAATGT
CGAAAGACGAATGGGAAACTTCTATAATTACTTGGTGGCAAGAACATCGTGGCATGTTGC
GCGAAGACGCAATGATGGAATATTTGAAAATTGCTCAGGATTTAGAGATGTATGGTGTCA
ATTACTTTGAAATTCGCAATAAAAAAGGAACCGAATTATATCTTGGAGTCGATGCGTTGG
GTTTGAACATTTATGAAAAAGACGATAAACTGACGCCTAAAATTGGCTTCCCATGGTCAG
AAATTCGTAATATATCATTTAATGATAAGAAATTCATCATCAAACCTATTGACAAGAAGG
CGCCAGATTTTGTCTTCTTCGCACCACGTGTTCGTATCAATAAGCGCATTCTTGCACTGT
GTATGGGTAATCATGAGCTTTATATGCGTCGTAGAAAACCTGATACCATCGATGTTCAGC
AAATGAAGGCACAAGCTCGTGAAGAAAAGAATGCTAAACAGCAAGAGCGTGAAAAACTTC
AATTGGCACTTGCAGCAAGAGAACGTGCAGAAAAGAAACAGCAAGAGTACGAAGATCGCT
TACGTACAATGCAAGAAGAAATCAATCGTTCACAAGCTAACTTAATGGAAGCTCAAGAGA
TGATAAGACGTTTAGAAGAGCAGTTAAAACAATTGCAGCTATCGAAAGATGAACTTGAGC
AGCGTCAGAATGAATTGCAAGAAATGCTTACTCGTTTGGAAGAAAGCAAAAACATGGAAG
CAGCAGAACGTCAGAAATTGGAAGAAGAAATTTCTGCAAAACAAATCGAAGTGGCCAAGA
TTCAAGAAGAAGTCGAAGCAAAGGATTCCGAAACAAGACGATTACAAGAAGAGGTTGAAG
AAGCACGCCGC

>g13085.t16 Gene=g13085 Length=436
MDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDPKGDLTWIKLYKKVMSQDIQ
KTDPLQFKFRAKFYPEDVAEELIQDITLRLFYLQVKNAILSDEIYCPPETSVLLASYAVQ
ARHGDFNKGTHGPGFLVNDRLLPQRVIDQHKMSKDEWETSIITWWQEHRGMLREDAMMEY
LKIAQDLEMYGVNYFEIRNKKGTELYLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFN
DKKFIIKPIDKKAPDFVFFAPRVRINKRILALCMGNHELYMRRRKPDTIDVQQMKAQARE
EKNAKQQEREKLQLALAARERAEKKQQEYEDRLRTMQEEINRSQANLMEAQEMIRRLEEQ
LKQLQLSKDELEQRQNELQEMLTRLEESKNMEAAERQKLEEEISAKQIEVAKIQEEVEAK
DSETRRLQEEVEEARR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
25 g13085.t16 CDD cd14473 FERM_B-lobe 87 187 1.22641E-29
26 g13085.t16 CDD cd13194 FERM_C_ERM 189 285 6.00724E-73
24 g13085.t16 Coils Coil Coil 291 436 -
20 g13085.t16 Gene3D G3DSA:3.10.20.90 - 1 71 4.8E-33
23 g13085.t16 Gene3D G3DSA:1.20.80.10 - 72 188 3.1E-39
21 g13085.t16 Gene3D G3DSA:2.30.29.30 - 190 288 5.2E-47
22 g13085.t16 Gene3D G3DSA:1.20.5.450 - 289 436 1.1E-60
31 g13085.t16 MobiDBLite mobidb-lite consensus disorder prediction 416 436 -
5 g13085.t16 PANTHER PTHR23281:SF18 MOESIN/EZRIN/RADIXIN HOMOLOG 1 1 435 9.5E-237
6 g13085.t16 PANTHER PTHR23281 MERLIN/MOESIN/EZRIN/RADIXIN 1 435 9.5E-237
12 g13085.t16 PRINTS PR00661 ERM family signature 6 25 1.6E-64
10 g13085.t16 PRINTS PR00935 Band 4.1 protein family signature 26 38 3.6E-29
16 g13085.t16 PRINTS PR00661 ERM family signature 58 77 1.6E-64
7 g13085.t16 PRINTS PR00935 Band 4.1 protein family signature 93 106 3.6E-29
13 g13085.t16 PRINTS PR00661 ERM family signature 102 123 1.6E-64
8 g13085.t16 PRINTS PR00935 Band 4.1 protein family signature 106 126 3.6E-29
15 g13085.t16 PRINTS PR00661 ERM family signature 148 165 1.6E-64
9 g13085.t16 PRINTS PR00935 Band 4.1 protein family signature 175 191 3.6E-29
11 g13085.t16 PRINTS PR00661 ERM family signature 198 218 1.6E-64
14 g13085.t16 PRINTS PR00661 ERM family signature 273 292 1.6E-64
4 g13085.t16 Pfam PF09379 FERM N-terminal domain 3 57 1.7E-14
3 g13085.t16 Pfam PF00373 FERM central domain 82 195 2.0E-24
2 g13085.t16 Pfam PF09380 FERM C-terminal PH-like domain 199 287 6.8E-26
1 g13085.t16 Pfam PF00769 Ezrin/radixin/moesin family 320 436 2.7E-20
30 g13085.t16 ProSitePatterns PS00660 FERM domain signature 1. 47 77 -
29 g13085.t16 ProSitePatterns PS00661 FERM domain signature 2. 165 194 -
32 g13085.t16 ProSiteProfiles PS50057 FERM domain profile. 1 284 79.762
28 g13085.t16 SMART SM00295 B41_5 1 195 2.3E-71
27 g13085.t16 SMART SM01196 FERM_C_3 199 288 3.8E-36
18 g13085.t16 SUPERFAMILY SSF54236 Ubiquitin-like 2 76 2.89E-22
19 g13085.t16 SUPERFAMILY SSF47031 Second domain of FERM 78 187 2.49E-38
17 g13085.t16 SUPERFAMILY SSF50729 PH domain-like 188 331 2.06E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005856 cytoskeleton CC
GO:0008092 cytoskeletal protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values