Gene loci information

Transcript annotation

  • This transcript has been annotated as Moesin/ezrin/radixin homolog 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13085 g13085.t17 isoform g13085.t17 27876424 27877400
chr_1 g13085 g13085.t17 exon g13085.t17.exon1 27876424 27877400
chr_1 g13085 g13085.t17 cds g13085.t17.CDS1 27876540 27877400
chr_1 g13085 g13085.t17 TSS g13085.t17 NA NA
chr_1 g13085 g13085.t17 TTS g13085.t17 NA NA

Sequences

>g13085.t17 Gene=g13085 Length=977
TTCTTGCATCATATGCCGTTCAAGCGCGTCATGGTGATTTCAATAAAGGAACACATGGCC
CTGGTTTCTTAGTAAACGATAGATTACTTCCACAACGCGTCATCGATCAGCATAAAATGT
CGAAAGACGAATGGGAAACTTCTATAATTACTTGGTGGCAAGAACATCGTGGCATGTTGC
GCGAAGACGCAATGATGGAATATTTGAAAATTGCTCAGGATTTAGAGATGTATGGTGTCA
ATTACTTTGAAATTCGCAATAAAAAAGGAACCGAATTATATCTTGGAGTCGATGCGTTGG
GTTTGAACATTTATGAAAAAGACGATAAACTGACGCCTAAAATTGGCTTCCCATGGTCAG
AAATTCGTAATATATCATTTAATGATAAGAAATTCATCATCAAACCTATTGACAAGAAGG
CGCCAGATTTTGTCTTCTTCGCACCACGTGTTCGTATCAATAAGCGCATTCTTGCACTGT
GTATGGGTAATCATGAGCTTTATATGCGTCGTAGAAAACCTGATACCATCGATGTTCAGC
AAATGAAGGCACAAGCTCGTGAAGAAAAGAATGCTAAACAGCAAGAGCGTGAAAAACTTC
AATTGGCACTTGCAGCAAGAGAACGTGCAGAAAAGAAACAGCAAGAGTACGAAGATCGCT
TACGTACAATGCAAGAAGAAATCAATCGTTCACAAGCTAACTTAATGGAAGCTCAAGAGA
TGATAAGACGTTTAGAAGAGCAGTTAAAACAATTGCAGCTATCGAAAGATGAACTTGAGC
AGCGTCAGAATGAATTGCAAGAAATGCTTACTCGTTTGGAAGAAAGCAAAAACATGGAAG
CAGCAGAACGTCAGAAATTGGAAGAAGAAATTTCTGCAAAACAAATCGAAGTGGCCAAGA
TTCAAGAAGAAGTCGAAGCAAAGGATTCCGAAACAAGACGATTACAAGAAGAGGTTGAAG
AAGCACGCCGCAAACAG

>g13085.t17 Gene=g13085 Length=287
MSKDEWETSIITWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKGTELYLGVDA
LGLNIYEKDDKLTPKIGFPWSEIRNISFNDKKFIIKPIDKKAPDFVFFAPRVRINKRILA
LCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYED
RLRTMQEEINRSQANLMEAQEMIRRLEEQLKQLQLSKDELEQRQNELQEMLTRLEESKNM
EAAERQKLEEEISAKQIEVAKIQEEVEAKDSETRRLQEEVEEARRKQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g13085.t17 CDD cd14473 FERM_B-lobe 1 36 1.23349E-6
15 g13085.t17 CDD cd13194 FERM_C_ERM 38 134 2.9093E-75
13 g13085.t17 Coils Coil Coil 140 287 -
12 g13085.t17 Gene3D G3DSA:1.20.80.10 - 1 38 5.2E-7
10 g13085.t17 Gene3D G3DSA:2.30.29.30 - 39 137 2.4E-47
11 g13085.t17 Gene3D G3DSA:1.20.5.450 - 138 287 9.8E-62
18 g13085.t17 MobiDBLite mobidb-lite consensus disorder prediction 266 287 -
4 g13085.t17 PANTHER PTHR23281:SF18 MOESIN/EZRIN/RADIXIN HOMOLOG 1 1 286 1.6E-139
5 g13085.t17 PANTHER PTHR23281 MERLIN/MOESIN/EZRIN/RADIXIN 1 286 1.6E-139
7 g13085.t17 PRINTS PR00661 ERM family signature 47 67 2.1E-21
6 g13085.t17 PRINTS PR00661 ERM family signature 122 141 2.1E-21
3 g13085.t17 Pfam PF00373 FERM central domain 2 44 3.9E-9
2 g13085.t17 Pfam PF09380 FERM C-terminal PH-like domain 48 137 3.2E-26
1 g13085.t17 Pfam PF00769 Ezrin/radixin/moesin family 169 287 6.6E-21
17 g13085.t17 ProSitePatterns PS00661 FERM domain signature 2. 14 43 -
19 g13085.t17 ProSiteProfiles PS50057 FERM domain profile. 1 133 36.938
16 g13085.t17 SMART SM01196 FERM_C_3 48 137 3.8E-36
9 g13085.t17 SUPERFAMILY SSF47031 Second domain of FERM 2 36 2.09E-9
8 g13085.t17 SUPERFAMILY SSF50729 PH domain-like 37 180 6.39E-42

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005856 cytoskeleton CC
GO:0008092 cytoskeletal protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values