General information for g13085.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Moesin/ezrin/radixin homolog 1.
Parent gene
- The parent gene g13085 is located on chr_1: 27878596..27879117 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13085 | g13085.t23 | isoform | g13085.t23 | 27877244 | 27879056 |
| chr_1 | g13085 | g13085.t23 | exon | g13085.t23.exon1 | 27877244 | 27877400 |
| chr_1 | g13085 | g13085.t23 | exon | g13085.t23.exon2 | 27878156 | 27878367 |
| chr_1 | g13085 | g13085.t23 | cds | g13085.t23.CDS1 | 27878233 | 27878367 |
| chr_1 | g13085 | g13085.t23 | exon | g13085.t23.exon3 | 27878432 | 27879056 |
| chr_1 | g13085 | g13085.t23 | cds | g13085.t23.CDS2 | 27878432 | 27878596 |
| chr_1 | g13085 | g13085.t23 | TTS | g13085.t23 | 27879872 | 27879872 |
| chr_1 | g13085 | g13085.t23 | TSS | g13085.t23 | NA | NA |
Sequences
>g13085.t23 Gene=g13085 Length=994
AGAAAGCAAAAACATGGAAGCAGCAGAACGTCAGAAATTGGAAGAAGAAATTTCTGCAAA
ACAAATCGAAGTGGCCAAGATTCAAGAAGAAGTCGAAGCAAAGGATTCCGAAACAAGACG
ATTACAAGAAGAGGTTGAAGAAGCACGCCGCAAACAGCTGCAGCACTTTTGGCAGCTACA
CAAACACCTAAACATCATCATTTGGCTGAAGATGAAAATGGAGATGATGATGATATGACG
AATGGAGATAATGGATCTGGTGGCGGAGATGTATCAAGAGATTTAGATACAGATATGGAT
ATCAAAGATCCAATTGAAGATAGACGTACATTAGCTGAACGTAATGAAAGATTACACGAT
CAATTGAAGGCATTAAAACAAGATTTGGCACAATCTCGTGACGATACAAAAGAGACTGCC
AATGATAAAATCCATAGAGAAAATGTACGTCAGGGACGTGACAAATATAAGACATTGCGT
GAAATAAGAAAAGGAAACACCAAACGTCGTGTGGATCAGTTTGAAAACATGTAAAAAGAA
CATATTAACTATGATGATGTACATAAGCACTACAGCATTTAAGAAAAAAAGATGAGCAAT
CAACAAAAGTAAAAACAACACTTGAAACACACAAAAGGGACTTTCCAATTACTTACTTTT
TTTCAATTATATAGACTTTTAGAATCAATACAATATCGTCAAGACGATTATTTTCATACA
AAAAAAGTTAGATATCACAGCTCATTTTATGCTCATGCTTAATCTGTCGCTTCCCAATTA
TCAAAGTTTTTTTTTCTATTTTTTATATTTGAATTTGCATTGTTATGAAAGAAATTTTAA
AAATAAATTCATATTTTTTCGCTTATTCGAAAGATACACACATGAGTGTGTGTGCTGTCT
TTAATCATCTTTATAGATAATGTTATATTACATATGATTATATTAAAAAAAAAAAACATT
CTTAGGCCATTATCCACTATTTCTTGATGAAATG
>g13085.t23 Gene=g13085 Length=99
MTNGDNGSGGGDVSRDLDTDMDIKDPIEDRRTLAERNERLHDQLKALKQDLAQSRDDTKE
TANDKIHRENVRQGRDKYKTLREIRKGNTKRRVDQFENM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g13085.t23 | Coils | Coil | Coil | 30 | 64 | - |
| 9 | g13085.t23 | Gene3D | G3DSA:1.25.40.1020 | - | 17 | 99 | 9.3E-38 |
| 8 | g13085.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - |
| 7 | g13085.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 70 | - |
| 2 | g13085.t23 | PANTHER | PTHR23281:SF18 | MOESIN/EZRIN/RADIXIN HOMOLOG 1 | 15 | 99 | 2.7E-26 |
| 3 | g13085.t23 | PANTHER | PTHR23281 | MERLIN/MOESIN/EZRIN/RADIXIN | 15 | 99 | 2.7E-26 |
| 5 | g13085.t23 | PRINTS | PR00661 | ERM family signature | 54 | 75 | 3.7E-19 |
| 4 | g13085.t23 | PRINTS | PR00661 | ERM family signature | 76 | 97 | 3.7E-19 |
| 1 | g13085.t23 | Pfam | PF00769 | Ezrin/radixin/moesin family | 13 | 99 | 3.3E-39 |
| 6 | g13085.t23 | SUPERFAMILY | SSF48678 | Moesin tail domain | 18 | 99 | 3.53E-29 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003779 | actin binding | MF |
| GO:0008092 | cytoskeletal protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
