Gene loci information

Transcript annotation

  • This transcript has been annotated as Moesin/ezrin/radixin homolog 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13085 g13085.t4 TSS g13085.t4 27865974 27865974
chr_1 g13085 g13085.t4 isoform g13085.t4 27866022 27876755
chr_1 g13085 g13085.t4 exon g13085.t4.exon1 27866022 27866042
chr_1 g13085 g13085.t4 exon g13085.t4.exon2 27866963 27867168
chr_1 g13085 g13085.t4 exon g13085.t4.exon3 27871590 27871769
chr_1 g13085 g13085.t4 cds g13085.t4.CDS1 27871611 27871769
chr_1 g13085 g13085.t4 exon g13085.t4.exon4 27876246 27876755
chr_1 g13085 g13085.t4 cds g13085.t4.CDS2 27876246 27876755
chr_1 g13085 g13085.t4 TTS g13085.t4 NA NA

Sequences

>g13085.t4 Gene=g13085 Length=917
TTCAATTTTTTATTCTTTAAAATTTATTAATTTTGATATTCTTTTTTAAACGGAATATAC
AAAAATACGATATAAAGTCTCATCACTAGCAGCAGCAGTTCATCGCCACGAAAATCGCGA
GAGAAACTTTTTACATTAAAAACGAAAATTACGCGATTTCTCAGTTGAATAAATAATAAA
TTTTCAAAGATCCGCAGCTGAATTAAAAAAAAAAACAGAATCATCATCTAAATGTTCGCG
TTACGACGATGGATGCAGAGTTGGAATTTGCCATCCAACAAAGCACCACAGGCAAGCAGC
TTTTCGATCAAGTTGTTAAGACAATTGGCCTTCGAGAAGTTTGGTTCTTCGGTCTTCAGT
ATACAGATCCGAAAGGCGATTTGACATGGATTAAACTTTATAAGAAGGTGATGAGTCAAG
ATATTCAAAAGACGGATCCATTGCAGTTCAAATTCCGTGCAAAGTTCTATCCAGAAGATG
TTGCCGAAGAGCTCATTCAGGATATTACACTTCGACTGTTTTATTTGCAAGTTAAGAATG
CAATTTTGTCTGATGAAATTTACTGTCCGCCCGAAACTTCAGTACTTCTTGCATCATATG
CCGTTCAAGCGCGTCATGGTGATTTCAATAAAGGAACACATGGCCCTGGTTTCTTAGTAA
ACGATAGATTACTTCCACAACGCGTCATCGATCAGCATAAAATGTCGAAAGACGAATGGG
AAACTTCTATAATTACTTGGTGGCAAGAACATCGTGGCATGTTGCGCGAAGACGCAATGA
TGGAATATTTGAAAATTGCTCAGGATTTAGAGATGTATGGTGTCAATTACTTTGAAATTC
GCAATAAAAAAGGAACCGAATTATATCTTGGAGTCGATGCGTTGGGTTTGAACATTTATG
AAAAAGACGATAAACTG

>g13085.t4 Gene=g13085 Length=223
MDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDPKGDLTWIKLYKKVMSQDIQ
KTDPLQFKFRAKFYPEDVAEELIQDITLRLFYLQVKNAILSDEIYCPPETSVLLASYAVQ
ARHGDFNKGTHGPGFLVNDRLLPQRVIDQHKMSKDEWETSIITWWQEHRGMLREDAMMEY
LKIAQDLEMYGVNYFEIRNKKGTELYLGVDALGLNIYEKDDKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
20 g13085.t4 CDD cd14473 FERM_B-lobe 87 187 5.08849E-33
17 g13085.t4 Gene3D G3DSA:3.10.20.90 - 1 71 1.5E-33
19 g13085.t4 Gene3D G3DSA:1.20.80.10 - 72 188 7.2E-40
18 g13085.t4 Gene3D G3DSA:2.30.29.30 - 190 223 7.5E-12
3 g13085.t4 PANTHER PTHR23281:SF18 MOESIN/EZRIN/RADIXIN HOMOLOG 1 1 223 3.5E-133
4 g13085.t4 PANTHER PTHR23281 MERLIN/MOESIN/EZRIN/RADIXIN 1 223 3.5E-133
10 g13085.t4 PRINTS PR00661 ERM family signature 6 25 8.1E-53
8 g13085.t4 PRINTS PR00935 Band 4.1 protein family signature 26 38 4.0E-30
13 g13085.t4 PRINTS PR00661 ERM family signature 58 77 8.1E-53
5 g13085.t4 PRINTS PR00935 Band 4.1 protein family signature 93 106 4.0E-30
11 g13085.t4 PRINTS PR00661 ERM family signature 102 123 8.1E-53
6 g13085.t4 PRINTS PR00935 Band 4.1 protein family signature 106 126 4.0E-30
12 g13085.t4 PRINTS PR00661 ERM family signature 148 165 8.1E-53
7 g13085.t4 PRINTS PR00935 Band 4.1 protein family signature 175 191 4.0E-30
9 g13085.t4 PRINTS PR00661 ERM family signature 198 218 8.1E-53
2 g13085.t4 Pfam PF09379 FERM N-terminal domain 3 57 5.7E-15
1 g13085.t4 Pfam PF00373 FERM central domain 82 195 4.6E-25
22 g13085.t4 ProSitePatterns PS00660 FERM domain signature 1. 47 77 -
21 g13085.t4 ProSitePatterns PS00661 FERM domain signature 2. 165 194 -
24 g13085.t4 ProSiteProfiles PS50057 FERM domain profile. 1 223 68.153
23 g13085.t4 SMART SM00295 B41_5 1 195 2.3E-71
15 g13085.t4 SUPERFAMILY SSF54236 Ubiquitin-like 2 76 8.89E-23
16 g13085.t4 SUPERFAMILY SSF47031 Second domain of FERM 78 187 5.89E-39
14 g13085.t4 SUPERFAMILY SSF50729 PH domain-like 188 222 1.51E-8

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005856 cytoskeleton CC
GO:0008092 cytoskeletal protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values