General information for g13085.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Moesin/ezrin/radixin homolog 1.
Parent gene
- The parent gene g13085 is located on chr_1: 27878596..27879117 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13085 | g13085.t6 | TSS | g13085.t6 | 27865974 | 27865974 |
| chr_1 | g13085 | g13085.t6 | isoform | g13085.t6 | 27866035 | 27872281 |
| chr_1 | g13085 | g13085.t6 | exon | g13085.t6.exon1 | 27866035 | 27866042 |
| chr_1 | g13085 | g13085.t6 | exon | g13085.t6.exon2 | 27866963 | 27867178 |
| chr_1 | g13085 | g13085.t6 | cds | g13085.t6.CDS1 | 27867167 | 27867178 |
| chr_1 | g13085 | g13085.t6 | exon | g13085.t6.exon3 | 27871590 | 27871786 |
| chr_1 | g13085 | g13085.t6 | cds | g13085.t6.CDS2 | 27871590 | 27871786 |
| chr_1 | g13085 | g13085.t6 | exon | g13085.t6.exon4 | 27871841 | 27872281 |
| chr_1 | g13085 | g13085.t6 | cds | g13085.t6.CDS3 | 27871841 | 27871973 |
| chr_1 | g13085 | g13085.t6 | TTS | g13085.t6 | NA | NA |
Sequences
>g13085.t6 Gene=g13085 Length=862
TCTTTAAAATTTATTAATTTTGATATTCTTTTTTAAACGGAATATACAAAAATACGATAT
AAAGTCTCATCACTAGCAGCAGCAGTTCATCGCCACGAAAATCGCGAGAGAAACTTTTTA
CATTAAAAACGAAAATTACGCGATTTCTCAGTTGAATAAATAATAAATTTTCAAAGATCC
GCAGCTGAATTAAAAAAAAAAACAGAATCATCATGCCAAAATCACTAAATGTTCGCGTTA
CGACGATGGATGCAGAGTTGGAATTTGCCATCCAACAAAGCACCACAGGCAAGCAGCTTT
TCGATCAAGTTGTTAAGACAATTGGCCTTCGAGAAGTTTGGTTCTTCGGTCTTCAGTATA
CAGATCCGAAAGGCGATTTGACATGGATTAAACTTTATAAGAAGGTAAGACGAAAGAGAA
TTTTTTATGCTTCTTACTTAAATTTTTTTGAAAATACAAGTATTTATTCTTCCACCACCT
TCTTTTCTTGTGTCTTCGATTTTTGTTCGAGTTTCTTTTGTGCTAATTGCTCCACACACC
CATTAGTCCGTTAGAAGAAGAGGAATAGAGGAAAAAAGAAAGAAAAACAATACTAGAAAT
GATTATGCAGTTGAATTTCGTAGACTTCCGGCAAGTGTGACTTTTTAAAGTAGAGAAAAA
TTGTAACATTTTATTGCCAATTGAAAATTATTTTTAACGACACTTTTGTGTAAATCATTT
ACCGATAATTGCTGTTCGTTGCTGCTCATTTAAACATTCCAGAAACTTTTTTCCTCTGCT
AATTTCTCAATCCACTCATACATATATGTGGGCAATGATGTCATATGACAAACAACAGAA
TAACAGAATGATGATGATGATG
>g13085.t6 Gene=g13085 Length=113
MPKSLNVRVTTMDAELEFAIQQSTTGKQLFDQVVKTIGLREVWFFGLQYTDPKGDLTWIK
LYKKVRRKRIFYASYLNFFENTSIYSSTTFFSCVFDFCSSFFCANCSTHPLVR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13085.t6 | Gene3D | G3DSA:3.10.20.90 | - | 4 | 80 | 2.9E-32 |
| 2 | g13085.t6 | PANTHER | PTHR23281 | MERLIN/MOESIN/EZRIN/RADIXIN | 2 | 77 | 2.6E-31 |
| 1 | g13085.t6 | Pfam | PF09379 | FERM N-terminal domain | 9 | 67 | 3.7E-16 |
| 6 | g13085.t6 | ProSiteProfiles | PS50057 | FERM domain profile. | 5 | 113 | 16.149 |
| 4 | g13085.t6 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 75 | 2.27E-19 |
| 3 | g13085.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 70 | 92 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005856 | cytoskeleton | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
