Gene loci information

Transcript annotation

  • This transcript has been annotated as Aspartate aminotransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13095 g13095.t5 TSS g13095.t5 27932619 27932619
chr_1 g13095 g13095.t5 isoform g13095.t5 27932662 27934520
chr_1 g13095 g13095.t5 exon g13095.t5.exon1 27932662 27932720
chr_1 g13095 g13095.t5 cds g13095.t5.CDS1 27932662 27932720
chr_1 g13095 g13095.t5 exon g13095.t5.exon2 27933012 27933109
chr_1 g13095 g13095.t5 cds g13095.t5.CDS2 27933012 27933109
chr_1 g13095 g13095.t5 exon g13095.t5.exon3 27933246 27933646
chr_1 g13095 g13095.t5 cds g13095.t5.CDS3 27933246 27933646
chr_1 g13095 g13095.t5 exon g13095.t5.exon4 27933765 27934253
chr_1 g13095 g13095.t5 cds g13095.t5.CDS4 27933765 27934253
chr_1 g13095 g13095.t5 exon g13095.t5.exon5 27934314 27934520
chr_1 g13095 g13095.t5 cds g13095.t5.CDS5 27934314 27934520
chr_1 g13095 g13095.t5 TTS g13095.t5 27934761 27934761

Sequences

>g13095.t5 Gene=g13095 Length=1254
ATGTCTTCTAAACTTTTGCAAAATAAAGGGTTGACAAGTATTTTAGCAACGAGATGCAGC
TCATGGTGGAGTTCTGTTCAAATGGGACCACCTGATGCAATTCTCGGTGTTACAGAAGCA
TTTAAAAAGGATACAAATCCTAAGAAGATCAACTTGGGCGCTTATCGCGATGATAATGGA
AAACCTTATGTTTTACCTAGCGTTCAAAAGGCCGAAGAATTATTGGCAAAGAAAGCTTTA
GATAAAGAATATGCCCCGATTTCTGGACCTGCTGACTTTTGTAAATTGAGTATTGAATTG
GCATTGGGAGAAAGTGAAGAACTCAAAGCCGGATTGAATGCTACAGTTCAAGGAATTTCA
GGAACTGGCTCATTGCGTGTTGGCGGCGCTTTCTTGGCAAGTTTCTTCCCTGGACCTAAA
GAAATTTATCTGCCAACACCATCATGGGGTAATCATACACCAATTTTCAAACACTCAGGA
CTTGGTGTTAAACAGTACAAATATTACGATCCAAAAACATGTGGCTTAGACTTTCAAGGA
GCTCTGGACGACATTTCCAAAATCCCTGAACGTTCAATTATTTTGCTTCACGCTTGTGCT
CATAATCCTACTGGTGTAGACCCAACGCCAGAACAATGGCAAGAGTTATCGGCATTAATT
AAGAAAAAGAATTTATTCCCGTACTTTGATATGGCTTATCAAGGATTCGCTAGTGGATCA
GTTGATAAAGATGCATTTGCTGTTCGATTGTTTATTCGTGATGGACATCAAATTGCTTTG
GCTCAAAGTTATGCAAAGAACATGGGTCTTTATGGAGAACGCGCTGGTGCATTTTCACTC
ATTACAAGTAGTAAAGATGAGGCTGAACGTACATTATCACAACTTAAGATTCTCATTAGA
CCAATGTATTCGAATCCACCCATTCATGGTGCACGTATTGTTAGCACAATTTTAAGTACA
CCCGATTTGAGATCAGAATGGTTGAAAGATGTAAAAGGAATGGCTGATCGTATTATTTCT
GTTCGAGCAACATTGAGAAAGAATTTGGAAAATCTTGGATCAAAGAAGAATTGGCAACAC
ATTACCGATCAAATCGGTATGTTCTGTTTCACTGGAATGAATGCAGATCAAAGTACTCGT
TTGTGCAACGAATTCAGCATCTATTTGACAAAAGATGGAAGAATTTCAATGGCTGGTGTC
ACTTCAAAGAATGTTGAATACTTGGCTCATGGAATTCATGAAGTCACAAAGTAA

>g13095.t5 Gene=g13095 Length=417
MSSKLLQNKGLTSILATRCSSWWSSVQMGPPDAILGVTEAFKKDTNPKKINLGAYRDDNG
KPYVLPSVQKAEELLAKKALDKEYAPISGPADFCKLSIELALGESEELKAGLNATVQGIS
GTGSLRVGGAFLASFFPGPKEIYLPTPSWGNHTPIFKHSGLGVKQYKYYDPKTCGLDFQG
ALDDISKIPERSIILLHACAHNPTGVDPTPEQWQELSALIKKKNLFPYFDMAYQGFASGS
VDKDAFAVRLFIRDGHQIALAQSYAKNMGLYGERAGAFSLITSSKDEAERTLSQLKILIR
PMYSNPPIHGARIVSTILSTPDLRSEWLKDVKGMADRIISVRATLRKNLENLGSKKNWQH
ITDQIGMFCFTGMNADQSTRLCNEFSIYLTKDGRISMAGVTSKNVEYLAHGIHEVTK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g13095.t5 CDD cd00609 AAT_like 66 406 8.72476E-40
10 g13095.t5 Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase 32 413 8.9E-168
11 g13095.t5 Gene3D G3DSA:3.40.640.10 - 64 335 8.9E-168
2 g13095.t5 PANTHER PTHR11879 ASPARTATE AMINOTRANSFERASE 9 417 4.6E-195
3 g13095.t5 PANTHER PTHR11879:SF39 ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL 9 417 4.6E-195
7 g13095.t5 PRINTS PR00799 Aspartate aminotransferase signature 194 213 1.5E-36
4 g13095.t5 PRINTS PR00799 Aspartate aminotransferase signature 225 237 1.5E-36
6 g13095.t5 PRINTS PR00799 Aspartate aminotransferase signature 293 318 1.5E-36
5 g13095.t5 PRINTS PR00799 Aspartate aminotransferase signature 361 379 1.5E-36
1 g13095.t5 Pfam PF00155 Aminotransferase class I and II 50 411 4.0E-84
9 g13095.t5 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 263 276 -
8 g13095.t5 SUPERFAMILY SSF53383 PLP-dependent transferases 21 416 3.15E-109

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0006520 cellular amino acid metabolic process BP
GO:0008483 transaminase activity MF
GO:0003824 catalytic activity MF
GO:0030170 pyridoxal phosphate binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values