Gene loci information

Transcript annotation

  • This transcript has been annotated as Aspartate aminotransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13095 g13095.t6 TSS g13095.t6 27932619 27932619
chr_1 g13095 g13095.t6 isoform g13095.t6 27932662 27934520
chr_1 g13095 g13095.t6 exon g13095.t6.exon1 27932662 27932720
chr_1 g13095 g13095.t6 exon g13095.t6.exon2 27933012 27933119
chr_1 g13095 g13095.t6 cds g13095.t6.CDS1 27933047 27933119
chr_1 g13095 g13095.t6 exon g13095.t6.exon3 27933246 27933646
chr_1 g13095 g13095.t6 cds g13095.t6.CDS2 27933246 27933646
chr_1 g13095 g13095.t6 exon g13095.t6.exon4 27933765 27934253
chr_1 g13095 g13095.t6 cds g13095.t6.CDS3 27933765 27934253
chr_1 g13095 g13095.t6 exon g13095.t6.exon5 27934314 27934520
chr_1 g13095 g13095.t6 cds g13095.t6.CDS4 27934314 27934520
chr_1 g13095 g13095.t6 TTS g13095.t6 27934761 27934761

Sequences

>g13095.t6 Gene=g13095 Length=1264
ATGTCTTCTAAACTTTTGCAAAATAAAGGGTTGACAAGTATTTTAGCAACGAGATGCAGC
TCATGGTGGAGTTCTGTTCAAATGGGACCACCTGATGCAATTCTCGGTGTTACAGAAGCA
TTTAAAAAGGATACAAATCCTAAGAAGATCAACTTGGGTGTCGGTAGGCGCTTATCGCGA
TGATAATGGAAAACCTTATGTTTTACCTAGCGTTCAAAAGGCCGAAGAATTATTGGCAAA
GAAAGCTTTAGATAAAGAATATGCCCCGATTTCTGGACCTGCTGACTTTTGTAAATTGAG
TATTGAATTGGCATTGGGAGAAAGTGAAGAACTCAAAGCCGGATTGAATGCTACAGTTCA
AGGAATTTCAGGAACTGGCTCATTGCGTGTTGGCGGCGCTTTCTTGGCAAGTTTCTTCCC
TGGACCTAAAGAAATTTATCTGCCAACACCATCATGGGGTAATCATACACCAATTTTCAA
ACACTCAGGACTTGGTGTTAAACAGTACAAATATTACGATCCAAAAACATGTGGCTTAGA
CTTTCAAGGAGCTCTGGACGACATTTCCAAAATCCCTGAACGTTCAATTATTTTGCTTCA
CGCTTGTGCTCATAATCCTACTGGTGTAGACCCAACGCCAGAACAATGGCAAGAGTTATC
GGCATTAATTAAGAAAAAGAATTTATTCCCGTACTTTGATATGGCTTATCAAGGATTCGC
TAGTGGATCAGTTGATAAAGATGCATTTGCTGTTCGATTGTTTATTCGTGATGGACATCA
AATTGCTTTGGCTCAAAGTTATGCAAAGAACATGGGTCTTTATGGAGAACGCGCTGGTGC
ATTTTCACTCATTACAAGTAGTAAAGATGAGGCTGAACGTACATTATCACAACTTAAGAT
TCTCATTAGACCAATGTATTCGAATCCACCCATTCATGGTGCACGTATTGTTAGCACAAT
TTTAAGTACACCCGATTTGAGATCAGAATGGTTGAAAGATGTAAAAGGAATGGCTGATCG
TATTATTTCTGTTCGAGCAACATTGAGAAAGAATTTGGAAAATCTTGGATCAAAGAAGAA
TTGGCAACACATTACCGATCAAATCGGTATGTTCTGTTTCACTGGAATGAATGCAGATCA
AAGTACTCGTTTGTGCAACGAATTCAGCATCTATTTGACAAAAGATGGAAGAATTTCAAT
GGCTGGTGTCACTTCAAAGAATGTTGAATACTTGGCTCATGGAATTCATGAAGTCACAAA
GTAA

>g13095.t6 Gene=g13095 Length=389
MQFSVLQKHLKRIQILRRSTWVSVGAYRDDNGKPYVLPSVQKAEELLAKKALDKEYAPIS
GPADFCKLSIELALGESEELKAGLNATVQGISGTGSLRVGGAFLASFFPGPKEIYLPTPS
WGNHTPIFKHSGLGVKQYKYYDPKTCGLDFQGALDDISKIPERSIILLHACAHNPTGVDP
TPEQWQELSALIKKKNLFPYFDMAYQGFASGSVDKDAFAVRLFIRDGHQIALAQSYAKNM
GLYGERAGAFSLITSSKDEAERTLSQLKILIRPMYSNPPIHGARIVSTILSTPDLRSEWL
KDVKGMADRIISVRATLRKNLENLGSKKNWQHITDQIGMFCFTGMNADQSTRLCNEFSIY
LTKDGRISMAGVTSKNVEYLAHGIHEVTK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g13095.t6 CDD cd00609 AAT_like 23 378 4.64318E-40
10 g13095.t6 Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase 22 385 6.1E-161
11 g13095.t6 Gene3D G3DSA:3.40.640.10 - 36 307 6.1E-161
2 g13095.t6 PANTHER PTHR11879 ASPARTATE AMINOTRANSFERASE 22 389 8.3E-176
3 g13095.t6 PANTHER PTHR11879:SF39 ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL 22 389 8.3E-176
5 g13095.t6 PRINTS PR00799 Aspartate aminotransferase signature 166 185 1.3E-36
4 g13095.t6 PRINTS PR00799 Aspartate aminotransferase signature 197 209 1.3E-36
7 g13095.t6 PRINTS PR00799 Aspartate aminotransferase signature 265 290 1.3E-36
6 g13095.t6 PRINTS PR00799 Aspartate aminotransferase signature 333 351 1.3E-36
1 g13095.t6 Pfam PF00155 Aminotransferase class I and II 22 383 9.6E-85
9 g13095.t6 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 235 248 -
8 g13095.t6 SUPERFAMILY SSF53383 PLP-dependent transferases 22 388 2.1E-101

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0006520 cellular amino acid metabolic process BP
GO:0008483 transaminase activity MF
GO:0003824 catalytic activity MF
GO:0030170 pyridoxal phosphate binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values