General information for g13099.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13099 is located on chr_1: 27943851..27945235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13099 | g13099.t3 | isoform | g13099.t3 | 27943685 | 27944668 |
| chr_1 | g13099 | g13099.t3 | exon | g13099.t3.exon1 | 27943685 | 27944668 |
| chr_1 | g13099 | g13099.t3 | cds | g13099.t3.CDS1 | 27944259 | 27944576 |
| chr_1 | g13099 | g13099.t3 | TTS | g13099.t3 | 27944653 | 27944653 |
| chr_1 | g13099 | g13099.t3 | TSS | g13099.t3 | NA | NA |
Sequences
>g13099.t3 Gene=g13099 Length=984
TATTTAGGAAGTAAAAATCCAGATCGGTATCAGCTTATTGTGAAGTATTATGACGAAGTA
TTTCTTGCATTTAATGCTATTGTGCAAAATTATTATTTGCATAAAAATGGTATGATTACA
AAACAAATGGACTTTGTATCTTGCTTATTGTGTAAAATTTATAGGTGCATCAATATCAGA
ATCATTTTATGGCTTAACACGATTTAATTTAAAAACTAATCAGTTTAAGAGACGTGATTT
TATCGTGTCATTTGCAGTTCTTGTAATTATTCCTTATTTGTTAAGGAAATTAGATAAAAA
GGTGACGACAGTAAAAGAAAAGTTAGAAGATGAACTAAGCAATGATGACAAATACAAATT
TATTGGTGTATATACATATAAAACTCTGAAGGCATCATATGAATTTGCTCAAATTATAAA
ATACATTAGTTATTTAAGTGGTCGTTCCAAGACACACAACATTCCACTTTTCTTATCAAG
CATTGGATTACGACATGCAAATCTACAAGATGACTCATTTAGCTTTAGTGATATAATAAG
TGGAAATGTCAAATTTTCAACTGTAATAGGGTCAATGGTATTGAGAACTTTAGAATTTGG
TGGATTCTTTTTACAATTTTTACAATGGTATCAAGAGAGTTCTGCATCTCAAAAAATTAT
ATCACAATTACCAACACCTATTGCTCCAAAACAAGACAGTGATGCGAAGAAATATTCAAA
TATATGTCCATTGTGCTATCAACATTTTGCAATTCCAACTGTTTTAACAATATCTGGCTA
TGTTTTTTGTTATAAATGCATAACCAAGCATTTAAGACGACATCAATATTGTCCTGTTAC
CAATTATCCAGCAACAATGGATGATTTGACAAGGCTTTATGATAACAATTAATTTCAACT
TTTACTTGAATATGGGTGCTAGTGTTTAACATTAAGTTTTTAATAAAATGAATCGGTGTT
TTTAGATATAATGAATTTTCTTTT
>g13099.t3 Gene=g13099 Length=105
MVLRTLEFGGFFLQFLQWYQESSASQKIISQLPTPIAPKQDSDAKKYSNICPLCYQHFAI
PTVLTISGYVFCYKCITKHLRRHQYCPVTNYPATMDDLTRLYDNN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13099.t3 | CDD | cd16451 | mRING_PEX12 | 51 | 92 | 0e+00 |
| 4 | g13099.t3 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 19 | 104 | 0e+00 |
| 2 | g13099.t3 | PANTHER | PTHR12888 | PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12 | 6 | 103 | 0e+00 |
| 1 | g13099.t3 | Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 51 | 88 | 5e-07 |
| 3 | g13099.t3 | SUPERFAMILY | SSF57850 | RING/U-box | 50 | 102 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005779 | integral component of peroxisomal membrane | CC |
| GO:0008022 | protein C-terminus binding | MF |
| GO:0008270 | zinc ion binding | MF |
| GO:0006625 | protein targeting to peroxisome | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
