General information for g13107.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytochrome P450 9e2.
Parent gene
- The parent gene g13107 is located on chr_1: 27992122..27993083 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13107 | g13107.t10 | TTS | g13107.t10 | 27990737 | 27990737 |
| chr_1 | g13107 | g13107.t10 | isoform | g13107.t10 | 27990978 | 27992860 |
| chr_1 | g13107 | g13107.t10 | exon | g13107.t10.exon1 | 27990978 | 27991985 |
| chr_1 | g13107 | g13107.t10 | cds | g13107.t10.CDS1 | 27990978 | 27991985 |
| chr_1 | g13107 | g13107.t10 | exon | g13107.t10.exon2 | 27992042 | 27992246 |
| chr_1 | g13107 | g13107.t10 | cds | g13107.t10.CDS2 | 27992042 | 27992200 |
| chr_1 | g13107 | g13107.t10 | exon | g13107.t10.exon3 | 27992413 | 27992591 |
| chr_1 | g13107 | g13107.t10 | exon | g13107.t10.exon4 | 27992658 | 27992860 |
| chr_1 | g13107 | g13107.t10 | TSS | g13107.t10 | 27993083 | 27993083 |
Sequences
>g13107.t10 Gene=g13107 Length=1595
ATGATTATTTGGATTTTATTATTGATTGCCGCAGTCATTTTGCTGTACAAATATGGAACG
AGAAATTTCGATTACTTTCAAAAGAAAGGACTGGCTTTTAATAAGCCTCATTTTCTTGTT
GGGTCACGCCTAAGTACAGTTCTTGGTACAAAAAATATGATCGAAATGCTCACTGAAATT
TATAATGAGCATAGAGATGAAAAAATTTCCGGCATGTTTGAATTCAATCGTCCAGCATAT
TTTATTCGTGACCCAGAGATGATTAAACGACTTTGTATTAAAGAATTTGATTCATTCAGC
GATCATCGACTTATTCTTTCTAAAGAAGCAGAACCTCTCTTTGCTTCTGCACTTTTCGGT
TTGACGGGTCAAAAATGGAGAGAAATGTGATGAAAACTTTTTCTTTTTCATACACTTTAG
GCAGCAAAATGCGTCTAATGTTTAAGCTCATAAACGACGTTGGCTCTCAAATGTCGAATA
CTGTTCTTGAACAAATAAATAAAGGAGCTGACAACAAAATTGAGTTTAAAGAATTTGCTC
AGAAATTTACAATCGATATTATAGCAAGTTGCGCATTTGGATTAGAGATAAATTCATTCA
ATAATCCCAATAATGACTTCCTGAGAATTGCAAGAAAAGCAACAAATTTCGCTACCTTTA
AGACCACAATAAAATTAGTGGGTTTACTTGGTGCACCATGGTTAATGAAAATATTTAAAA
TCAAGTTTTTGGATGAAGAATTTTATAAATTCTTTGGTGCAATGATGACAGATACTATAA
AAACTAGAGAAGAGAAGAAAATAACTCGTAATGATATGATCGATTTGATATTGCAAGCAA
AACACGGTAAACAACTTGATTATGACAATGAAGAGCATACAGTTGATGGTTTCGCAACAG
TTGAGGAATCACAATTAGGAAAAGAAAAAGTTAAGAGAACATGGGAAGATGATGAACTTT
TAGCACAATGTGTTGGCTTCTTTTTTGGTGGATTTGAAACAGTTTCGAGTGTCATGACTT
TTATGGCTGCTGAATTGATTATTGATCCTAATATTCAGAAAAAATTACAAGACGAAATTG
ATGAAGTTCACAAGTCATTGAACGGAGAAACTTTGACATACGAGCATGTACAAAAAATGA
AATACATGGATATGGTTGTTTGCGAGACTCTACGAAAATGGCCACCTGCACCAATTGTTG
ATAGAAAGTGCACTAAAGAATTTAATTTCGAATATGATGACAAAAAATTCATTATGGAAT
ATGATAAAAATTTCTATGTTCCTATCTATTCATTACATCATGATGAACGTTATTTCCCAG
AACCAGAAAAATTCGATCCTGAACGATTTAATGATGAAAATAAGAAAAATATCAGACAAG
ATTGTTATATACCTTTTGGTATTGGTCCAAGAAATTGCATTGGAAACCGTTTTGCTTTAC
TTGAAGTGAAAACAATTTTTTACTACCTCCTATTAAACTTTACATTTGAAGCGACAAATG
AAACTGAAATTCCCCTCAAATTGGGAAGAAGTCAAACAACATTACAACTTGAAAATGGAT
TGAAATGTGCCTTGATTCCACGAGCTGAAGAATAA
>g13107.t10 Gene=g13107 Length=388
MRLMFKLINDVGSQMSNTVLEQINKGADNKIEFKEFAQKFTIDIIASCAFGLEINSFNNP
NNDFLRIARKATNFATFKTTIKLVGLLGAPWLMKIFKIKFLDEEFYKFFGAMMTDTIKTR
EEKKITRNDMIDLILQAKHGKQLDYDNEEHTVDGFATVEESQLGKEKVKRTWEDDELLAQ
CVGFFFGGFETVSSVMTFMAAELIIDPNIQKKLQDEIDEVHKSLNGETLTYEHVQKMKYM
DMVVCETLRKWPPAPIVDRKCTKEFNFEYDDKKFIMEYDKNFYVPIYSLHHDERYFPEPE
KFDPERFNDENKKNIRQDCYIPFGIGPRNCIGNRFALLEVKTIFYYLLLNFTFEATNETE
IPLKLGRSQTTLQLENGLKCALIPRAEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g13107.t10 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 388 | 3.0E-97 |
| 2 | g13107.t10 | PANTHER | PTHR24292 | CYTOCHROME P450 | 1 | 368 | 3.1E-136 |
| 3 | g13107.t10 | PANTHER | PTHR24292:SF90 | CYTOCHROME P450 317A1-RELATED | 1 | 368 | 3.1E-136 |
| 7 | g13107.t10 | PRINTS | PR00463 | E-class P450 group I signature | 176 | 193 | 1.5E-22 |
| 11 | g13107.t10 | PRINTS | PR00385 | P450 superfamily signature | 187 | 204 | 1.1E-9 |
| 8 | g13107.t10 | PRINTS | PR00463 | E-class P450 group I signature | 196 | 222 | 1.5E-22 |
| 10 | g13107.t10 | PRINTS | PR00385 | P450 superfamily signature | 242 | 253 | 1.1E-9 |
| 6 | g13107.t10 | PRINTS | PR00463 | E-class P450 group I signature | 285 | 309 | 1.5E-22 |
| 5 | g13107.t10 | PRINTS | PR00463 | E-class P450 group I signature | 320 | 330 | 1.5E-22 |
| 9 | g13107.t10 | PRINTS | PR00385 | P450 superfamily signature | 321 | 330 | 1.1E-9 |
| 4 | g13107.t10 | PRINTS | PR00463 | E-class P450 group I signature | 330 | 353 | 1.5E-22 |
| 12 | g13107.t10 | PRINTS | PR00385 | P450 superfamily signature | 330 | 341 | 1.1E-9 |
| 1 | g13107.t10 | Pfam | PF00067 | Cytochrome P450 | 8 | 371 | 5.1E-68 |
| 14 | g13107.t10 | ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 323 | 332 | - |
| 13 | g13107.t10 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 2 | 385 | 1.14E-86 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed