General information for g13107.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytochrome P450 9e2.
Parent gene
- The parent gene g13107 is located on chr_1: 27992122..27993083 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13107 | g13107.t12 | TTS | g13107.t12 | 27990737 | 27990737 |
| chr_1 | g13107 | g13107.t12 | isoform | g13107.t12 | 27990978 | 27992885 |
| chr_1 | g13107 | g13107.t12 | exon | g13107.t12.exon1 | 27990978 | 27991985 |
| chr_1 | g13107 | g13107.t12 | cds | g13107.t12.CDS1 | 27990978 | 27991985 |
| chr_1 | g13107 | g13107.t12 | exon | g13107.t12.exon2 | 27992042 | 27992246 |
| chr_1 | g13107 | g13107.t12 | cds | g13107.t12.CDS2 | 27992042 | 27992246 |
| chr_1 | g13107 | g13107.t12 | exon | g13107.t12.exon3 | 27992413 | 27992591 |
| chr_1 | g13107 | g13107.t12 | cds | g13107.t12.CDS3 | 27992413 | 27992420 |
| chr_1 | g13107 | g13107.t12 | exon | g13107.t12.exon4 | 27992654 | 27992885 |
| chr_1 | g13107 | g13107.t12 | TSS | g13107.t12 | 27993083 | 27993083 |
Sequences
>g13107.t12 Gene=g13107 Length=1624
GTCATTCTAATTCCAGTTTGTCATAATGATTATTTGGATTTTATTATTGATTGCCGCAGT
CATTTTGCTGTACAAATATGGAACGAGAAATTTCGATTACTTTCAAAAGAAAGGACTGGC
TTTTAATAAGCCTCATTTTCTTGTTGGGTCACGCCTAAGTACAGTTCTTGGTACAAAAAA
TATGATCGAAATGCTCACTGAAATTTATAATGAGCATAGAGATGAAAAGTGAAATTTCCG
GCATGTTTGAATTCAATCGTCCAGCATATTTTATTCGTGACCCAGAGATGATTAAACGAC
TTTGTATTAAAGAATTTGATTCATTCAGCGATCATCGACTTATTCTTTCTAAAGAAGCAG
AACCTCTCTTTGCTTCTGCACTTTTCGGTTTGACGGGTCAAAAATGGAGAGAAATGTGAT
GAAAACTTTTTCTTTTTCATACACTTTAGGCAGCAAAATGCGTCTAATGTTTAAGCTCAT
AAACGACGTTGGCTCTCAAATGTCGAATACTGTTCTTGAACAAATAAATAAAGGAGCTGA
CAACAAAATTGAGTTTAAAGAATTTGCTCAGAAATTTACAATCGATATTATAGCAAGTTG
CGCATTTGGATTAGAGATAAATTCATTCAATAATCCCAATAATGACTTCCTGAGAATTGC
AAGAAAAGCAACAAATTTCGCTACCTTTAAGACCACAATAAAATTAGTGGGTTTACTTGG
TGCACCATGGTTAATGAAAATATTTAAAATCAAGTTTTTGGATGAAGAATTTTATAAATT
CTTTGGTGCAATGATGACAGATACTATAAAAACTAGAGAAGAGAAGAAAATAACTCGTAA
TGATATGATCGATTTGATATTGCAAGCAAAACACGGTAAACAACTTGATTATGACAATGA
AGAGCATACAGTTGATGGTTTCGCAACAGTTGAGGAATCACAATTAGGAAAAGAAAAAGT
TAAGAGAACATGGGAAGATGATGAACTTTTAGCACAATGTGTTGGCTTCTTTTTTGGTGG
ATTTGAAACAGTTTCGAGTGTCATGACTTTTATGGCTGCTGAATTGATTATTGATCCTAA
TATTCAGAAAAAATTACAAGACGAAATTGATGAAGTTCACAAGTCATTGAACGGAGAAAC
TTTGACATACGAGCATGTACAAAAAATGAAATACATGGATATGGTTGTTTGCGAGACTCT
ACGAAAATGGCCACCTGCACCAATTGTTGATAGAAAGTGCACTAAAGAATTTAATTTCGA
ATATGATGACAAAAAATTCATTATGGAATATGATAAAAATTTCTATGTTCCTATCTATTC
ATTACATCATGATGAACGTTATTTCCCAGAACCAGAAAAATTCGATCCTGAACGATTTAA
TGATGAAAATAAGAAAAATATCAGACAAGATTGTTATATACCTTTTGGTATTGGTCCAAG
AAATTGCATTGGAAACCGTTTTGCTTTACTTGAAGTGAAAACAATTTTTTACTACCTCCT
ATTAAACTTTACATTTGAAGCGACAAATGAAACTGAAATTCCCCTCAAATTGGGAAGAAG
TCAAACAACATTACAACTTGAAAATGGATTGAAATGTGCCTTGATTCCACGAGCTGAAGA
ATAA
>g13107.t12 Gene=g13107 Length=406
MERNVMKTFSFSYTLGSKMRLMFKLINDVGSQMSNTVLEQINKGADNKIEFKEFAQKFTI
DIIASCAFGLEINSFNNPNNDFLRIARKATNFATFKTTIKLVGLLGAPWLMKIFKIKFLD
EEFYKFFGAMMTDTIKTREEKKITRNDMIDLILQAKHGKQLDYDNEEHTVDGFATVEESQ
LGKEKVKRTWEDDELLAQCVGFFFGGFETVSSVMTFMAAELIIDPNIQKKLQDEIDEVHK
SLNGETLTYEHVQKMKYMDMVVCETLRKWPPAPIVDRKCTKEFNFEYDDKKFIMEYDKNF
YVPIYSLHHDERYFPEPEKFDPERFNDENKKNIRQDCYIPFGIGPRNCIGNRFALLEVKT
IFYYLLLNFTFEATNETEIPLKLGRSQTTLQLENGLKCALIPRAEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g13107.t12 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 3 | 406 | 1.6E-98 |
| 2 | g13107.t12 | PANTHER | PTHR24292 | CYTOCHROME P450 | 6 | 386 | 4.5E-139 |
| 3 | g13107.t12 | PANTHER | PTHR24292:SF90 | CYTOCHROME P450 317A1-RELATED | 6 | 386 | 4.5E-139 |
| 4 | g13107.t12 | PRINTS | PR00463 | E-class P450 group I signature | 194 | 211 | 1.8E-22 |
| 9 | g13107.t12 | PRINTS | PR00385 | P450 superfamily signature | 205 | 222 | 1.3E-9 |
| 6 | g13107.t12 | PRINTS | PR00463 | E-class P450 group I signature | 214 | 240 | 1.8E-22 |
| 12 | g13107.t12 | PRINTS | PR00385 | P450 superfamily signature | 260 | 271 | 1.3E-9 |
| 5 | g13107.t12 | PRINTS | PR00463 | E-class P450 group I signature | 303 | 327 | 1.8E-22 |
| 8 | g13107.t12 | PRINTS | PR00463 | E-class P450 group I signature | 338 | 348 | 1.8E-22 |
| 10 | g13107.t12 | PRINTS | PR00385 | P450 superfamily signature | 339 | 348 | 1.3E-9 |
| 7 | g13107.t12 | PRINTS | PR00463 | E-class P450 group I signature | 348 | 371 | 1.8E-22 |
| 11 | g13107.t12 | PRINTS | PR00385 | P450 superfamily signature | 348 | 359 | 1.3E-9 |
| 1 | g13107.t12 | Pfam | PF00067 | Cytochrome P450 | 7 | 389 | 3.7E-68 |
| 14 | g13107.t12 | ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 341 | 350 | - |
| 13 | g13107.t12 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 16 | 403 | 1.27E-87 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed