General information for g13107.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytochrome P450 9e2.
Parent gene
- The parent gene g13107 is located on chr_1: 27992122..27993083 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13107 | g13107.t13 | TTS | g13107.t13 | 27990737 | 27990737 |
| chr_1 | g13107 | g13107.t13 | isoform | g13107.t13 | 27990978 | 27992886 |
| chr_1 | g13107 | g13107.t13 | exon | g13107.t13.exon1 | 27990978 | 27991985 |
| chr_1 | g13107 | g13107.t13 | cds | g13107.t13.CDS1 | 27990978 | 27991985 |
| chr_1 | g13107 | g13107.t13 | exon | g13107.t13.exon2 | 27992042 | 27992204 |
| chr_1 | g13107 | g13107.t13 | cds | g13107.t13.CDS2 | 27992042 | 27992158 |
| chr_1 | g13107 | g13107.t13 | exon | g13107.t13.exon3 | 27992413 | 27992591 |
| chr_1 | g13107 | g13107.t13 | exon | g13107.t13.exon4 | 27992658 | 27992886 |
| chr_1 | g13107 | g13107.t13 | TSS | g13107.t13 | 27993083 | 27993083 |
Sequences
>g13107.t13 Gene=g13107 Length=1579
GGTCATTCTAATTCCAGTTTGTCATAATGATTATTTGGATTTTATTATTGATTGCCGCAG
TCATTTTGCTGTACAAATATGGAACGAGAAATTTCGATTACTTTCAAAAGAAAGGACTGG
CTTTTAATAAGCCTCATTTTCTTGTTGGGTCACGCCTAAGTACAGTTCTTGGTACAAAAA
ATATGATCGAAATGCTCACTGAAATTTATAATGAGCATAGAGATGAAAAAATTTCCGGCA
TGTTTGAATTCAATCGTCCAGCATATTTTATTCGTGACCCAGAGATGATTAAACGACTTT
GTATTAAAGAATTTGATTCATTCAGCGATCATCGACTTATTCTTTCTAAAGAAGCAGAAC
CTCTCTTTGCTTCTGCACTTTTCGGTTTGACGGGTCAAAAATGGAGAGCAAAATGCGTCT
AATGTTTAAGCTCATAAACGACGTTGGCTCTCAAATGTCGAATACTGTTCTTGAACAAAT
AAATAAAGGAGCTGACAACAAAATTGAGTTTAAAGAATTTGCTCAGAAATTTACAATCGA
TATTATAGCAAGTTGCGCATTTGGATTAGAGATAAATTCATTCAATAATCCCAATAATGA
CTTCCTGAGAATTGCAAGAAAAGCAACAAATTTCGCTACCTTTAAGACCACAATAAAATT
AGTGGGTTTACTTGGTGCACCATGGTTAATGAAAATATTTAAAATCAAGTTTTTGGATGA
AGAATTTTATAAATTCTTTGGTGCAATGATGACAGATACTATAAAAACTAGAGAAGAGAA
GAAAATAACTCGTAATGATATGATCGATTTGATATTGCAAGCAAAACACGGTAAACAACT
TGATTATGACAATGAAGAGCATACAGTTGATGGTTTCGCAACAGTTGAGGAATCACAATT
AGGAAAAGAAAAAGTTAAGAGAACATGGGAAGATGATGAACTTTTAGCACAATGTGTTGG
CTTCTTTTTTGGTGGATTTGAAACAGTTTCGAGTGTCATGACTTTTATGGCTGCTGAATT
GATTATTGATCCTAATATTCAGAAAAAATTACAAGACGAAATTGATGAAGTTCACAAGTC
ATTGAACGGAGAAACTTTGACATACGAGCATGTACAAAAAATGAAATACATGGATATGGT
TGTTTGCGAGACTCTACGAAAATGGCCACCTGCACCAATTGTTGATAGAAAGTGCACTAA
AGAATTTAATTTCGAATATGATGACAAAAAATTCATTATGGAATATGATAAAAATTTCTA
TGTTCCTATCTATTCATTACATCATGATGAACGTTATTTCCCAGAACCAGAAAAATTCGA
TCCTGAACGATTTAATGATGAAAATAAGAAAAATATCAGACAAGATTGTTATATACCTTT
TGGTATTGGTCCAAGAAATTGCATTGGAAACCGTTTTGCTTTACTTGAAGTGAAAACAAT
TTTTTACTACCTCCTATTAAACTTTACATTTGAAGCGACAAATGAAACTGAAATTCCCCT
CAAATTGGGAAGAAGTCAAACAACATTACAACTTGAAAATGGATTGAAATGTGCCTTGAT
TCCACGAGCTGAAGAATAA
>g13107.t13 Gene=g13107 Length=374
MSNTVLEQINKGADNKIEFKEFAQKFTIDIIASCAFGLEINSFNNPNNDFLRIARKATNF
ATFKTTIKLVGLLGAPWLMKIFKIKFLDEEFYKFFGAMMTDTIKTREEKKITRNDMIDLI
LQAKHGKQLDYDNEEHTVDGFATVEESQLGKEKVKRTWEDDELLAQCVGFFFGGFETVSS
VMTFMAAELIIDPNIQKKLQDEIDEVHKSLNGETLTYEHVQKMKYMDMVVCETLRKWPPA
PIVDRKCTKEFNFEYDDKKFIMEYDKNFYVPIYSLHHDERYFPEPEKFDPERFNDENKKN
IRQDCYIPFGIGPRNCIGNRFALLEVKTIFYYLLLNFTFEATNETEIPLKLGRSQTTLQL
ENGLKCALIPRAEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g13107.t13 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 374 | 1.1E-94 |
| 2 | g13107.t13 | PANTHER | PTHR24292 | CYTOCHROME P450 | 8 | 354 | 7.4E-134 |
| 3 | g13107.t13 | PANTHER | PTHR24292:SF90 | CYTOCHROME P450 317A1-RELATED | 8 | 354 | 7.4E-134 |
| 7 | g13107.t13 | PRINTS | PR00463 | E-class P450 group I signature | 162 | 179 | 1.3E-22 |
| 11 | g13107.t13 | PRINTS | PR00385 | P450 superfamily signature | 173 | 190 | 9.8E-10 |
| 4 | g13107.t13 | PRINTS | PR00463 | E-class P450 group I signature | 182 | 208 | 1.3E-22 |
| 9 | g13107.t13 | PRINTS | PR00385 | P450 superfamily signature | 228 | 239 | 9.8E-10 |
| 5 | g13107.t13 | PRINTS | PR00463 | E-class P450 group I signature | 271 | 295 | 1.3E-22 |
| 8 | g13107.t13 | PRINTS | PR00463 | E-class P450 group I signature | 306 | 316 | 1.3E-22 |
| 10 | g13107.t13 | PRINTS | PR00385 | P450 superfamily signature | 307 | 316 | 9.8E-10 |
| 6 | g13107.t13 | PRINTS | PR00463 | E-class P450 group I signature | 316 | 339 | 1.3E-22 |
| 12 | g13107.t13 | PRINTS | PR00385 | P450 superfamily signature | 316 | 327 | 9.8E-10 |
| 1 | g13107.t13 | Pfam | PF00067 | Cytochrome P450 | 2 | 357 | 4.2E-67 |
| 14 | g13107.t13 | ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 309 | 318 | - |
| 13 | g13107.t13 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 6 | 371 | 3.27E-85 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
