General information for g13107.t35
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable cytochrome P450 9f2.
Parent gene
- The parent gene g13107 is located on chr_1: 27992122..27993083 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13107 | g13107.t35 | TTS | g13107.t35 | 27991332 | 27991332 |
| chr_1 | g13107 | g13107.t35 | isoform | g13107.t35 | 27991917 | 27993083 |
| chr_1 | g13107 | g13107.t35 | exon | g13107.t35.exon1 | 27991917 | 27991985 |
| chr_1 | g13107 | g13107.t35 | cds | g13107.t35.CDS1 | 27991917 | 27991985 |
| chr_1 | g13107 | g13107.t35 | exon | g13107.t35.exon2 | 27992042 | 27992226 |
| chr_1 | g13107 | g13107.t35 | cds | g13107.t35.CDS2 | 27992042 | 27992226 |
| chr_1 | g13107 | g13107.t35 | exon | g13107.t35.exon3 | 27992413 | 27992591 |
| chr_1 | g13107 | g13107.t35 | cds | g13107.t35.CDS3 | 27992413 | 27992591 |
| chr_1 | g13107 | g13107.t35 | exon | g13107.t35.exon4 | 27992658 | 27992885 |
| chr_1 | g13107 | g13107.t35 | cds | g13107.t35.CDS4 | 27992658 | 27992860 |
| chr_1 | g13107 | g13107.t35 | exon | g13107.t35.exon5 | 27993023 | 27993083 |
| chr_1 | g13107 | g13107.t35 | TSS | g13107.t35 | 27993083 | 27993083 |
Sequences
>g13107.t35 Gene=g13107 Length=722
AGATCGAGTGAAGTCGCGAAGGCGAGTGGTTGATAATTTACTTTGCTGAAGTTAATATCA
AGTCATTCTAATTCCAGTTTGTCATAATGATTATTTGGATTTTATTATTGATTGCCGCAG
TCATTTTGCTGTACAAATATGGAACGAGAAATTTCGATTACTTTCAAAAGAAAGGACTGG
CTTTTAATAAGCCTCATTTTCTTGTTGGGTCACGCCTAAGTACAGTTCTTGGTACAAAAA
ATATGATCGAAATGCTCACTGAAATTTATAATGAGCATAGAGATGAAAAAATTTCCGGCA
TGTTTGAATTCAATCGTCCAGCATATTTTATTCGTGACCCAGAGATGATTAAACGACTTT
GTATTAAAGAATTTGATTCATTCAGCGATCATCGACTTATTCTTTCTAAAGAAGCAGAAC
CTCTCTTTGCTTCTGCACTTTTCGGTTTGACGGGTCAAAAATGGAGAGCTTTTTCATACA
CTTTAGGCAGCAAAATGCGTCTAATGTTTAAGCTCATAAACGACGTTGGCTCTCAAATGT
CGAATACTGTTCTTGAACAAATAAATAAAGGAGCTGACAACAAAATTGAGTTTAAAGAAT
TTGCTCAGAAATTTACAATCGATATTATAGCAAGTTGCGCATTTGGATTAGAGATAAATT
CATTCAATAATCCCAATAATGACTTCCTGAGAATTGCAAGAAAAGCAACAAATTTCGCTA
CC
>g13107.t35 Gene=g13107 Length=212
MIIWILLLIAAVILLYKYGTRNFDYFQKKGLAFNKPHFLVGSRLSTVLGTKNMIEMLTEI
YNEHRDEKISGMFEFNRPAYFIRDPEMIKRLCIKEFDSFSDHRLILSKEAEPLFASALFG
LTGQKWRAFSYTLGSKMRLMFKLINDVGSQMSNTVLEQINKGADNKIEFKEFAQKFTIDI
IASCAFGLEINSFNNPNNDFLRIARKATNFAT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13107.t35 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 14 | 212 | 1.5E-31 |
| 2 | g13107.t35 | PANTHER | PTHR24292 | CYTOCHROME P450 | 5 | 210 | 3.8E-46 |
| 1 | g13107.t35 | Pfam | PF00067 | Cytochrome P450 | 35 | 203 | 8.8E-12 |
| 7 | g13107.t35 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 8 | g13107.t35 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 9 | g13107.t35 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 10 | g13107.t35 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 6 | g13107.t35 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 212 | - |
| 4 | g13107.t35 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 35 | 210 | 3.59E-19 |
| 3 | g13107.t35 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed