Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13107 g13107.t4 isoform g13107.t4 27990577 27992045
chr_1 g13107 g13107.t4 exon g13107.t4.exon1 27990577 27991985
chr_1 g13107 g13107.t4 cds g13107.t4.CDS1 27990978 27991868
chr_1 g13107 g13107.t4 exon g13107.t4.exon2 27992042 27992045
chr_1 g13107 g13107.t4 TSS g13107.t4 NA NA
chr_1 g13107 g13107.t4 TTS g13107.t4 NA NA

Sequences

>g13107.t4 Gene=g13107 Length=1413
AGAGATAAATTCATTCAATAATCCCAATAATGACTTCCTGAGAATTGCAAGAAAAGCAAC
AAATTTCGCTACCTTTAAGACCACAATAAAATTAGTGGGTTTACTTGGTGCACCATGGTT
AATGAAAATATTTAAAATCAAGTTTTTGGATGAAGAATTTTATAAATTCTTTGGTGCAAT
GATGACAGATACTATAAAAACTAGAGAAGAGAAGAAAATAACTCGTAATGATATGATCGA
TTTGATATTGCAAGCAAAACACGGTAAACAACTTGATTATGACAATGAAGAGCATACAGT
TGATGGTTTCGCAACAGTTGAGGAATCACAATTAGGAAAAGAAAAAGTTAAGAGAACATG
GGAAGATGATGAACTTTTAGCACAATGTGTTGGCTTCTTTTTTGGTGGATTTGAAACAGT
TTCGAGTGTCATGACTTTTATGGCTGCTGAATTGATTATTGATCCTAATATTCAGAAAAA
ATTACAAGACGAAATTGATGAAGTTCACAAGTCATTGAACGGAGAAACTTTGACATACGA
GCATGTACAAAAAATGAAATACATGGATATGGTTGTTTGCGAGACTCTACGAAAATGGCC
ACCTGCACCAATTGTTGATAGAAAGTGCACTAAAGAATTTAATTTCGAATATGATGACAA
AAAATTCATTATGGAATATGATAAAAATTTCTATGTTCCTATCTATTCATTACATCATGA
TGAACGTTATTTCCCAGAACCAGAAAAATTCGATCCTGAACGATTTAATGATGAAAATAA
GAAAAATATCAGACAAGATTGTTATATACCTTTTGGTATTGGTCCAAGAAATTGCATTGG
AAACCGTTTTGCTTTACTTGAAGTGAAAACAATTTTTTACTACCTCCTATTAAACTTTAC
ATTTGAAGCGACAAATGAAACTGAAATTCCCCTCAAATTGGGAAGAAGTCAAACAACATT
ACAACTTGAAAATGGATTGAAATGTGCCTTGATTCCACGAGCTGAAGAATAATATTTATG
TCTTTTAAATATCTTTGATTAATAATAAGCAATTAAACATTTAATGACGTTTGCATACAC
AATTCACTATGGCCATCTATCTAATAAAATTTATTATCACAAAGGATAATTTTAATTACG
ATACTAATTATTAATGCTACTCATAACTATTTTCATGTAAAATTACTAAGAAGTATAAAA
GCACAATGCTTTAAAATAAAGCTAATCAGTTTATATACTAACTCGTTGTAATCAAAACTA
TTTTGAGAAATTTTTATTTTTTTCTGTTCGTCAATGTGGAATTAAAATTCATCCAATAAA
TTTGAATGCTTCAAAGAATAATTTTTTTAATCGTAATATAATAAAAACGTCTCAAAAATT
TCAAAGCAATTTCCTTTTAAGAGTTGCAGTAAA

>g13107.t4 Gene=g13107 Length=296
MKIFKIKFLDEEFYKFFGAMMTDTIKTREEKKITRNDMIDLILQAKHGKQLDYDNEEHTV
DGFATVEESQLGKEKVKRTWEDDELLAQCVGFFFGGFETVSSVMTFMAAELIIDPNIQKK
LQDEIDEVHKSLNGETLTYEHVQKMKYMDMVVCETLRKWPPAPIVDRKCTKEFNFEYDDK
KFIMEYDKNFYVPIYSLHHDERYFPEPEKFDPERFNDENKKNIRQDCYIPFGIGPRNCIG
NRFALLEVKTIFYYLLLNFTFEATNETEIPLKLGRSQTTLQLENGLKCALIPRAEE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g13107.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 296 2.0E-78
2 g13107.t4 PANTHER PTHR24292 CYTOCHROME P450 3 276 5.6E-113
3 g13107.t4 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 3 276 5.6E-113
4 g13107.t4 PRINTS PR00463 E-class P450 group I signature 84 101 4.8E-23
11 g13107.t4 PRINTS PR00385 P450 superfamily signature 95 112 4.5E-10
8 g13107.t4 PRINTS PR00463 E-class P450 group I signature 104 130 4.8E-23
9 g13107.t4 PRINTS PR00385 P450 superfamily signature 150 161 4.5E-10
5 g13107.t4 PRINTS PR00463 E-class P450 group I signature 193 217 4.8E-23
6 g13107.t4 PRINTS PR00463 E-class P450 group I signature 228 238 4.8E-23
12 g13107.t4 PRINTS PR00385 P450 superfamily signature 229 238 4.5E-10
7 g13107.t4 PRINTS PR00463 E-class P450 group I signature 238 261 4.8E-23
10 g13107.t4 PRINTS PR00385 P450 superfamily signature 238 249 4.5E-10
1 g13107.t4 Pfam PF00067 Cytochrome P450 24 279 1.6E-61
14 g13107.t4 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 231 240 -
13 g13107.t4 SUPERFAMILY SSF48264 Cytochrome P450 4 293 1.31E-74

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values