General information for g13117.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g13117 is located on chr_1: 28034844..28036016 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13117 | g13117.t1 | isoform | g13117.t1 | 28034136 | 28036016 |
| chr_1 | g13117 | g13117.t1 | exon | g13117.t1.exon1 | 28034136 | 28034343 |
| chr_1 | g13117 | g13117.t1 | cds | g13117.t1.CDS1 | 28034136 | 28034343 |
| chr_1 | g13117 | g13117.t1 | exon | g13117.t1.exon2 | 28034474 | 28034844 |
| chr_1 | g13117 | g13117.t1 | cds | g13117.t1.CDS2 | 28034474 | 28034844 |
| chr_1 | g13117 | g13117.t1 | exon | g13117.t1.exon3 | 28034919 | 28035240 |
| chr_1 | g13117 | g13117.t1 | cds | g13117.t1.CDS3 | 28034919 | 28035240 |
| chr_1 | g13117 | g13117.t1 | exon | g13117.t1.exon4 | 28035298 | 28036016 |
| chr_1 | g13117 | g13117.t1 | cds | g13117.t1.CDS4 | 28035298 | 28036016 |
| chr_1 | g13117 | g13117.t1 | TSS | g13117.t1 | NA | NA |
| chr_1 | g13117 | g13117.t1 | TTS | g13117.t1 | NA | NA |
Sequences
>g13117.t1 Gene=g13117 Length=1620
ATGTCACCAAATAATCTGTTAGAGAGTCATTTCAACATGGAAATTGATCTGAGCAAGTAT
ATAAGAAAAAAGACTGCGGAAGAGCTGCAAATGGATGAAAATAATAATCTTGAAGATTTT
TCTAAAAATCCATTGATTAAAACACGTTGCATTAAAGATTATTACGATAATTGCAATATT
TTTGTTACTGGCTCTACTGGTTTTTTGGGCAAAGTTTTGATTGAGAAACTCCTTCGCTCA
TGTGATGGAATTCGAAAAATTTACATTTTGTTAAGGCCAAAGCGTGGCATCGGAAGTGAA
CAACGATTTGAAGAATATCTTCGTAATCCAATTTTTGAGCGCATTCGCAATAATAATCCA
GATATATTAAAGAAATTATATTGTATTCCGGGTGATATAAATGAATCAAATCTTGGCCTT
CATGCACGTGACATTCAACTGTTGCAACAAAATATTGACATTGTTTTTCATGTCGCGGCA
ACTGTTCGTTTCAATGAACCACTCAAAGTCGCTGCCAATCTTAACACATTCGGTACACGT
CGTGTAATGGAGCTATGCACTAAGATGACAAAATTAAAGAGTTTAGTGCATGTAAGCACA
GCATATAGCAATCCCAATTTGAAGAATGTAGACGAACAGGTTTATGGAACAACATCAACA
CCAGATCATCATCTGTTCATTAATAGTGTCGGCATTTTACCTGATGAATTTACTGAGACA
ATTGCCAATCGCTTTAATAAACGACATCCAAATACGTATACTTTGACGAAGCATATGGCT
GAACATATCGTTCTCGAATATAATAATGTGCTTCCTTTGTGTATTGTCCGACCATCGATT
GTTACAGCAGCAGTTAATGAGCCTTATCCTGGTTGGATTGACAATATTTATGGCATCACA
GGCATTTTAATGGAAATTGGAAGAGGAACAATCACAACAATAATGGGTGTAGAAGAGGGA
CTTGTTGATTTAATGCCTGTAGATATTGTTTGCAATACATTGATCACAGCAGGATGGGCA
AACAGTTTTATAAGAACACCGAATGAGATCACTGTCTATAATTGTACATCGGGTCATTTC
AATCCAATGAATTACAAAGAGCTAAGAAAGCACATTTTAAAATATTCACTTTTAAATCCA
TCAAAATACATCGCAATGTATCCAAATTTTGTTTATCGAAAAAGTCGATTGATGCACAAC
ATAATTGAAATTTTTATGCATTTTCTACCAGCACTCATGTTCGATGTGTTGCTTCGAATG
CAAGGCAAAAAGCCAATAATGTTTAAAATTGCAAAACGTGTAAAAATAGCACAAGATACT
GGAGATTATTTTGTATTAAATGATTGGAATTTTAATTCGAAAAATTTGAAACGAATAATT
CGTGCTGCAAATCAGACACAACTTGATGCTAATGAATTTTGCTGCGATGTGACATCTCTA
GATTGGGACGATTATATTGGTCGCTATATGATGGGAATTAGAACCTACGTTCTAAAAGAC
GACATCAGCAGCCTTCCAAAAGCGCGACAAAAACTTCAAAAGATTTATTATATGAAACTC
TTTCTACAGTTTCTTTTGTTCGCAACCATTTACTTTGTTTTTTATGGCATATGGAATTAA
>g13117.t1 Gene=g13117 Length=539
MSPNNLLESHFNMEIDLSKYIRKKTAEELQMDENNNLEDFSKNPLIKTRCIKDYYDNCNI
FVTGSTGFLGKVLIEKLLRSCDGIRKIYILLRPKRGIGSEQRFEEYLRNPIFERIRNNNP
DILKKLYCIPGDINESNLGLHARDIQLLQQNIDIVFHVAATVRFNEPLKVAANLNTFGTR
RVMELCTKMTKLKSLVHVSTAYSNPNLKNVDEQVYGTTSTPDHHLFINSVGILPDEFTET
IANRFNKRHPNTYTLTKHMAEHIVLEYNNVLPLCIVRPSIVTAAVNEPYPGWIDNIYGIT
GILMEIGRGTITTIMGVEEGLVDLMPVDIVCNTLITAGWANSFIRTPNEITVYNCTSGHF
NPMNYKELRKHILKYSLLNPSKYIAMYPNFVYRKSRLMHNIIEIFMHFLPALMFDVLLRM
QGKKPIMFKIAKRVKIAQDTGDYFVLNDWNFNSKNLKRIIRAANQTQLDANEFCCDVTSL
DWDDYIGRYMMGIRTYVLKDDISSLPKARQKLQKIYYMKLFLQFLLFATIYFVFYGIWN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g13117.t1 | CDD | cd05236 | FAR-N_SDR_e | 59 | 375 | 1.27907E-120 |
| 15 | g13117.t1 | CDD | cd09071 | FAR_C | 405 | 498 | 6.60655E-26 |
| 8 | g13117.t1 | Gene3D | G3DSA:3.40.50.720 | - | 47 | 406 | 5.4E-76 |
| 3 | g13117.t1 | PANTHER | PTHR11011:SF65 | FATTY ACYL-COA REDUCTASE-RELATED | 48 | 530 | 5.1E-171 |
| 4 | g13117.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 48 | 530 | 5.1E-171 |
| 1 | g13117.t1 | Pfam | PF07993 | Male sterility protein | 62 | 333 | 6.9E-76 |
| 2 | g13117.t1 | Pfam | PF03015 | Male sterility protein | 406 | 500 | 1.7E-27 |
| 11 | g13117.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 396 | - |
| 13 | g13117.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 397 | 418 | - |
| 9 | g13117.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 419 | 515 | - |
| 12 | g13117.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 516 | 538 | - |
| 10 | g13117.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 539 | 539 | - |
| 7 | g13117.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 59 | 385 | 6.32E-33 |
| 5 | g13117.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 396 | 418 | - |
| 6 | g13117.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 516 | 538 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13356 (alcohol-forming fatty acyl-CoA reductase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
