General information for g13132.t31
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Enoyl-CoA hydratase domain-containing protein 2, mitochondrial.
Parent gene
- The parent gene g13132 is located on chr_1: 28120127..28122268 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13132 | g13132.t31 | TTS | g13132.t31 | 28119004 | 28119004 |
| chr_1 | g13132 | g13132.t31 | isoform | g13132.t31 | 28119112 | 28120184 |
| chr_1 | g13132 | g13132.t31 | exon | g13132.t31.exon1 | 28119112 | 28119657 |
| chr_1 | g13132 | g13132.t31 | cds | g13132.t31.CDS1 | 28119323 | 28119657 |
| chr_1 | g13132 | g13132.t31 | exon | g13132.t31.exon2 | 28119713 | 28120184 |
| chr_1 | g13132 | g13132.t31 | cds | g13132.t31.CDS2 | 28119713 | 28120127 |
| chr_1 | g13132 | g13132.t31 | TSS | g13132.t31 | 28120252 | 28120252 |
Sequences
>g13132.t31 Gene=g13132 Length=1018
TTTTAGATCAAATTCACTTCAAATTTTCAAAAGTACAAATCATTCACCACCACCAGCATG
TTGTCATTCCAAAAATCCATCAATTTTGCACTCAAATCAACACAAATTCGTAAAAGCTGC
TTATCACTTGCTAGTCGCAATTTTTGTGCAAAAATTGATAGTGAAGAAATTCGCTTGAGT
TATTTGACAGATGAACGTCAAGGCATTGCTGTTATCGAATTGAATCGTGAAAATGGAAAG
AATTCTTTTAACCGTTCAATGGCATCAAAATTACATCATGCTGTGGATGTTTTGACAACT
GATAAAAATGTTAGAGCTGTTATAATTAGAAGTTTAGTCAAAGGAGTTTTTTGTGCTGGA
GCTGACTTGAAAGAAAGAAAAACACTAACACCTGTTGAAGTTCATCGTTTTGTCAATTCA
TTGAGATCTTTGGTTGTGAAAATGGAAAATTTACCAATGCCAACAATTGCTGCAATTGAT
GGAGTTGCATTAGGTGGTGGACTTGAAATGGGATTATCATGTGATTTAAGAGTTGCAGCT
GATAAAGCTAAAATGGGTTTAGTTGAAACAAGATTAGCAATAATTCCAGGTGCAGGTGGC
ACACAAAGACTTCCTCGACTCATAAATGTTGCACTGGCTAAAGAGCTCATTTTCACAGCA
AGAGTTTTTAATGGTGATGAAGCTCTTAAAATGGGAGTTGTTAATCATTCAGTGCCACAA
AATGAAAATGGTGATGCTGCTTATCAGAGAGCATTGAAATTAGCTGAAGAAATTTTACCA
AATGGTCCTGTTGGAGTTGTAAGTTGAAAAACATAAAATTTTTAAAGAATTTTGATAAAA
TTTTTAATTTTTTTAGAGAATGGCAAAAAGAGCAATCAACAAAGGAATTCAAGTTGACTT
AAATACTGGTTATTGCATTGAAGAAGATTGTTATAGTCAAATTATTCCAACCAAAGATCG
TTTAGAAGGATTAGCTGCATTTGCTGAAAAGAGAAAGCCAAATTATACTGGAGAATAA
>g13132.t31 Gene=g13132 Length=249
MLSFQKSINFALKSTQIRKSCLSLASRNFCAKIDSEEIRLSYLTDERQGIAVIELNRENG
KNSFNRSMASKLHHAVDVLTTDKNVRAVIIRSLVKGVFCAGADLKERKTLTPVEVHRFVN
SLRSLVVKMENLPMPTIAAIDGVALGGGLEMGLSCDLRVAADKAKMGLVETRLAIIPGAG
GTQRLPRLINVALAKELIFTARVFNGDEALKMGVVNHSVPQNENGDAAYQRALKLAEEIL
PNGPVGVVS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13132.t31 | CDD | cd06558 | crotonase-like | 43 | 239 | 6.88347E-69 |
| 6 | g13132.t31 | Gene3D | G3DSA:3.90.226.10 | - | 28 | 240 | 1.4E-74 |
| 2 | g13132.t31 | PANTHER | PTHR11941:SF12 | METHYLGLUTACONYL-COA HYDRATASE, MITOCHONDRIAL | 22 | 247 | 7.2E-93 |
| 3 | g13132.t31 | PANTHER | PTHR11941 | ENOYL-COA HYDRATASE-RELATED | 22 | 247 | 7.2E-93 |
| 1 | g13132.t31 | Pfam | PF00378 | Enoyl-CoA hydratase/isomerase | 46 | 239 | 2.5E-49 |
| 5 | g13132.t31 | ProSitePatterns | PS00166 | Enoyl-CoA hydratase/isomerase signature. | 137 | 157 | - |
| 4 | g13132.t31 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 43 | 247 | 1.54E-63 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
