General information for g13134.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucose 4-epimerase.
Parent gene
- The parent gene g13134 is located on chr_1: 28122268..28123828 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13134 | g13134.t2 | TSS | g13134.t2 | 28122256 | 28122256 |
| chr_1 | g13134 | g13134.t2 | isoform | g13134.t2 | 28122268 | 28123276 |
| chr_1 | g13134 | g13134.t2 | exon | g13134.t2.exon1 | 28122268 | 28122343 |
| chr_1 | g13134 | g13134.t2 | cds | g13134.t2.CDS1 | 28122268 | 28122343 |
| chr_1 | g13134 | g13134.t2 | exon | g13134.t2.exon2 | 28122395 | 28123276 |
| chr_1 | g13134 | g13134.t2 | cds | g13134.t2.CDS2 | 28122395 | 28123275 |
| chr_1 | g13134 | g13134.t2 | TTS | g13134.t2 | NA | NA |
Sequences
>g13134.t2 Gene=g13134 Length=958
ATGACGGGAGAATTTGTTTTAGTTACTGGTGCTTCTGGTTATATCGGTTCACATGTTGTT
TTTGCATTGCTTGAAGCTGGCATTAATGTGCTGGCAATGGAAAACTCAACATCAACCGAA
TCTGGAAGTTTAAAAAAGCTTCAAGAAACTTCTGATAAAAAGCTTCAAATTTGTCGCTGT
AATTTATTAAATAATGAAGAAATTTCTTCTATCTTTAAACAATTTCCAATTTCAACTGTG
ATTCATTTAGCAGCATCAAAAGGTGTTAGTCAATCAATGTCATCACCACTCGCTTGCTAT
TCAAATAATCTTCTTAGTACTATCAATTTAATCACTGCCATGAAACAATACAAAGTTTTC
AACATGATTTTTAGTAGTTCTTGTGCTGTTTATGGTGACCAAAGTCAATTACCAGTAAAT
GAAACAGCACAATCACATTCACCCACCAATGTTTATGCGAAATCGAAGAAATTTGTTGAG
GAAATGTTATCTGACATTGCGAAAGCTGATAAGGAGTTTAAATTTATAATTTTTCGTTAT
TTCAATCCAGTTGGCGCGCATGAATCAAATTTGATCGGAGAAGATCCGTCAAAATTGCAA
GTTAGTTTATTGACACTCATGTGTAATGTTGCATTAGGAAGAAAGGAGAAAATTACAATT
TTTGGGAATTGTATTCGAGATTACATTCATGTAATGGATATTGCTGAAGCTCATACAGTA
GCTTTAAAGAAATTTCAAGATAATTTTAATTTCAAAGTGATAAATTTGGGTTCTAGTCGA
GGTACTTCCTTATTGGAATTGATTCAAATTTTTGAGAATGTAAATAATGTAAAAATTCCG
TATGAGATTAAAGAAAAGCGAGAAGGTGAAATTGAAGCAATTGTTGCTGATACGAATTTA
GCTGAAAATGAACTTGGATGGAAGGCAAGAAGAAATATTGAAAGCATGTGCAGAGATT
>g13134.t2 Gene=g13134 Length=319
MTGEFVLVTGASGYIGSHVVFALLEAGINVLAMENSTSTESGSLKKLQETSDKKLQICRC
NLLNNEEISSIFKQFPISTVIHLAASKGVSQSMSSPLACYSNNLLSTINLITAMKQYKVF
NMIFSSSCAVYGDQSQLPVNETAQSHSPTNVYAKSKKFVEEMLSDIAKADKEFKFIIFRY
FNPVGAHESNLIGEDPSKLQVSLLTLMCNVALGRKEKITIFGNCIRDYIHVMDIAEAHTV
ALKKFQDNFNFKVINLGSSRGTSLLELIQIFENVNNVKIPYEIKEKREGEIEAIVADTNL
AENELGWKARRNIESMCRD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13134.t2 | Gene3D | G3DSA:3.40.50.720 | - | 6 | 269 | 0 |
| 6 | g13134.t2 | Gene3D | G3DSA:3.90.25.10 | - | 197 | 319 | 0 |
| 2 | g13134.t2 | PANTHER | PTHR43725:SF14 | UDP-GLUCOSE 4-EPIMERASE | 5 | 319 | 0 |
| 3 | g13134.t2 | PANTHER | PTHR43725 | UDP-GLUCOSE 4-EPIMERASE | 5 | 319 | 0 |
| 1 | g13134.t2 | Pfam | PF16363 | GDP-mannose 4,6 dehydratase | 7 | 319 | 0 |
| 4 | g13134.t2 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 319 | 0 |
| 7 | g13134.t2 | TIGRFAM | TIGR01179 | galE: UDP-glucose 4-epimerase GalE | 6 | 319 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006012 | galactose metabolic process | BP |
| GO:0003978 | UDP-glucose 4-epimerase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
