General information for g13151.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exostosin-1.
Parent gene
- The parent gene g13151 is located on chr_1: 28258894..28261422 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13151 | g13151.t3 | isoform | g13151.t3 | 28258040 | 28259887 |
| chr_1 | g13151 | g13151.t3 | exon | g13151.t3.exon1 | 28258040 | 28258144 |
| chr_1 | g13151 | g13151.t3 | exon | g13151.t3.exon2 | 28258966 | 28259887 |
| chr_1 | g13151 | g13151.t3 | cds | g13151.t3.CDS1 | 28259074 | 28259694 |
| chr_1 | g13151 | g13151.t3 | TSS | g13151.t3 | NA | NA |
| chr_1 | g13151 | g13151.t3 | TTS | g13151.t3 | NA | NA |
Sequences
>g13151.t3 Gene=g13151 Length=1027
TTTTGTACAAGTCGGTCAACCTATCAATCCTCAATCAGCCCTCTATAAGCTAGTCAAAAG
CATAACAAAGAGTCAATTTGTAAATAGAATATTAATACTGTGGGCAGCAGATCAAAAAGT
GCCATCACGCAAGAGATTTCCTGCGACTGGACATGTGCCATTACATATAGTGACATCACT
AAATATACCGCAAATGCAAACACATTCATCACTTAACATTGCAGCAGGAGCAACAGATGA
ACGTCCAAGCATATCACAGCGTTTTCAGCCACATCCACTAATTGAGACAGATGCCATTCT
GTCACTTGATGAAGATGCCATACTCAACACAGAAGAGATTGATTTCGCATACAATGTGTG
GAAATTTTTTCCTGAGCGCATTGTTGGCTTTCCTGCTCGAGCACATTTTTACGATGATTC
AAAAAATACATGGGGCTATACGTCTAAGTGGACAAACTATTATTCAATTGTTTTAACTGG
TGCAGCGTTTTATCATCGCTATTATAATTATTTATATACAAATTTTCTTTCGCATTTACT
TTTGAAGACTGTGCAGCAATCATCCAATTGTGAAGACATTCTCATGAACATGATGGTATC
GCATGTTACTCGAAAACCGCCAATTAAAGTGACACAGCGCAAGGCATATAAAGATCGTGA
TAGTGTACGAAGTGTAAGTATACAAGACAAGCTCTTAACCACTCTTTATTATTATCATTA
TCATCACTTGCTAAAATTATCATTAGAAATGATACATACACACTTACAATTCTTTCATCT
CTTGTTTCTATCTATCTCTCTCTTTTTCATTTAGCCATGGAATGATCCAGATCATTTTAT
TCAACGTCAAAGCTGCCTCAATACATTTGTTGCAGTTTTTGGTTACATGCCATTATTGAA
ATCGAATATGCGTCTCGATCCATACTCACGTCTATCATTATTTTCTCATCTATGATTTTT
AAAAGGGAAAAATTGCAAAACAGTAGAAGAGAGAGAAATTACTTTTTAAAAATGTAAATC
AGGGATC
>g13151.t3 Gene=g13151 Length=206
MQTHSSLNIAAGATDERPSISQRFQPHPLIETDAILSLDEDAILNTEEIDFAYNVWKFFP
ERIVGFPARAHFYDDSKNTWGYTSKWTNYYSIVLTGAAFYHRYYNYLYTNFLSHLLLKTV
QQSSNCEDILMNMMVSHVTRKPPIKVTQRKAYKDRDSVRSVSIQDKLLTTLYYYHYHHLL
KLSLEMIHTHLQFFHLLFLSISLFFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13151.t3 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 4 | 169 | 0 |
| 2 | g13151.t3 | PANTHER | PTHR11062:SF252 | GLYCOSYLTRANSFERASE FAMILY 64 PROTEIN C4-LIKE | 20 | 146 | 0 |
| 3 | g13151.t3 | PANTHER | PTHR11062 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED | 20 | 146 | 0 |
| 1 | g13151.t3 | Pfam | PF09258 | Glycosyl transferase family 64 domain | 15 | 164 | 0 |
| 4 | g13151.t3 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 22 | 177 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0016757 | glycosyltransferase activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
