General information for g13156.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Pleckstrin homology domain-containing family M member 3.
Parent gene
- The parent gene g13156 is located on chr_1: 28282777..28283713 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13156 | g13156.t4 | isoform | g13156.t4 | 28281470 | 28282777 |
| chr_1 | g13156 | g13156.t4 | exon | g13156.t4.exon1 | 28281470 | 28282255 |
| chr_1 | g13156 | g13156.t4 | cds | g13156.t4.CDS1 | 28281509 | 28282255 |
| chr_1 | g13156 | g13156.t4 | exon | g13156.t4.exon2 | 28282316 | 28282777 |
| chr_1 | g13156 | g13156.t4 | cds | g13156.t4.CDS2 | 28282316 | 28282777 |
| chr_1 | g13156 | g13156.t4 | TTS | g13156.t4 | 28282873 | 28282873 |
| chr_1 | g13156 | g13156.t4 | TSS | g13156.t4 | NA | NA |
Sequences
>g13156.t4 Gene=g13156 Length=1248
CCTGGTGGTGAAGATACAAATGAAGATATATCAGAACGAATGTGTGAATCAAATGATGAG
CCATTAACTGAAAGTCAAGATATGCATCTTCCACTAGACAATGATGAAGAGAAAATGCAA
GAAAGTCAAGACGATGTCACACCAGAAAATAAAATTGGAAATTCATTACTAAGTGGTCAA
AATAGTTGGACATCTGGAGAACCTGCTGTTCAAATTTATAGAGAAGAAGTAGAAGAGGAA
AATGCTGAAGGTGGAGCTGCATCTACTGCAGAAATTGTGTACAATCGTTCAGTAACTGTG
CGCTCAGCAACAATTGATAATCAAAGTTTTGAGTCACTTTTAGAAGAGAAAATGAGAAGA
AATAGTGTTAACTTCAAAGCAGTGTGGGAAAGATTTCATAAAACAATGGAAAATAAAAAT
AAAAACATTCCAGAAGAAGAGGAAGCACCTGAAGGCTATGAAGTTATTAAAACATCTTTA
GCAAATAAGAAAGAAGCAGAAGAATTAGAACAGATGGTTGAAATTTTATGTAGATTAACT
ACTGAAAATGGACTTGATCAGCAGGGATTCGTTTGTAAAGGATGCAAATCTCCTCTTGTC
GATATCTCTAAAGCAACAGTTTGTGGGTTTGATGCTTGCTATTATTGTTCTGCGTGCATT
TCTAAAGATAAATATGCAATACCAGCAAAAATAATTTATAATTGGGACTTTTCAAAATAT
TCTGTAAGCAAAAAAGCTGCTGACTTTATTTCTGAATATCAATTTAAGCCATTTATTGAT
TTTAAGATATTAAATCCTGATATATATTCATATATCGATGAAATGAACAATTTACAAAAA
CTTCGAATACAATTGAACTTTATCCGCGCTTATATTTTCACATGTTCAGAAAGCACAATT
AATGAACTTCAAAAACTTTTATATGGAAAAGAACATATTTATGAAACAATTCACCTTTAC
TCAGTATCTGATTTATTTCTCATACAAAATGGTGCATTTGAAGCATTGCTTAAAAAAGTT
GTAAGTTTTGGTCGAGAACATTGCTTAAAGTGCATTTTATGTAGTAACAAAGGATTCATA
TGTGAGATATGCAGACGTTCAAAAATAATTTATGCATTTGACGTTGATGATACGGTGAGA
TGTAATACATGTGGTACCGTATCGCATATTAATTGCTATAAGCCAACTCAACCATGTCCT
AAATGTGAAAGAAGACGTAAAAGACAAATAGTTTCAATACTGGAATAA
>g13156.t4 Gene=g13156 Length=402
MCESNDEPLTESQDMHLPLDNDEEKMQESQDDVTPENKIGNSLLSGQNSWTSGEPAVQIY
REEVEEENAEGGAASTAEIVYNRSVTVRSATIDNQSFESLLEEKMRRNSVNFKAVWERFH
KTMENKNKNIPEEEEAPEGYEVIKTSLANKKEAEELEQMVEILCRLTTENGLDQQGFVCK
GCKSPLVDISKATVCGFDACYYCSACISKDKYAIPAKIIYNWDFSKYSVSKKAADFISEY
QFKPFIDFKILNPDIYSYIDEMNNLQKLRIQLNFIRAYIFTCSESTINELQKLLYGKEHI
YETIHLYSVSDLFLIQNGAFEALLKKVVSFGREHCLKCILCSNKGFICEICRRSKIIYAF
DVDDTVRCNTCGTVSHINCYKPTQPCPKCERRRKRQIVSILE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13156.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - |
| 6 | g13156.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 32 | - |
| 2 | g13156.t4 | PANTHER | PTHR12326:SF12 | PROTEIN CBG20681 | 58 | 396 | 1.2E-100 |
| 3 | g13156.t4 | PANTHER | PTHR12326 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN | 58 | 396 | 1.2E-100 |
| 1 | g13156.t4 | Pfam | PF13901 | Putative zinc-RING and/or ribbon | 194 | 393 | 6.1E-60 |
| 4 | g13156.t4 | SMART | SM01175 | DUF4206_2 | 193 | 396 | 9.6E-86 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
