Gene loci information

Transcript annotation

  • This transcript has been annotated as Mediator of RNA polymerase II transcription subunit 14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13165 g13165.t1 TSS g13165.t1 28301712 28301712
chr_1 g13165 g13165.t1 isoform g13165.t1 28301901 28306900
chr_1 g13165 g13165.t1 exon g13165.t1.exon1 28301901 28302052
chr_1 g13165 g13165.t1 cds g13165.t1.CDS1 28301901 28302052
chr_1 g13165 g13165.t1 exon g13165.t1.exon2 28302114 28302246
chr_1 g13165 g13165.t1 cds g13165.t1.CDS2 28302114 28302246
chr_1 g13165 g13165.t1 exon g13165.t1.exon3 28302308 28302480
chr_1 g13165 g13165.t1 cds g13165.t1.CDS3 28302308 28302480
chr_1 g13165 g13165.t1 exon g13165.t1.exon4 28302534 28304919
chr_1 g13165 g13165.t1 cds g13165.t1.CDS4 28302534 28304919
chr_1 g13165 g13165.t1 exon g13165.t1.exon5 28304982 28305878
chr_1 g13165 g13165.t1 cds g13165.t1.CDS5 28304982 28305878
chr_1 g13165 g13165.t1 exon g13165.t1.exon6 28305936 28306373
chr_1 g13165 g13165.t1 cds g13165.t1.CDS6 28305936 28306373
chr_1 g13165 g13165.t1 exon g13165.t1.exon7 28306439 28306900
chr_1 g13165 g13165.t1 cds g13165.t1.CDS7 28306439 28306900
chr_1 g13165 g13165.t1 TTS g13165.t1 28307000 28307000

Sequences

>g13165.t1 Gene=g13165 Length=4641
ATGCCACCGATCGAAATACAACAACAACAAATGCAGCAAGCAAATCAGCAAATGGCTTTG
CCAAATCAATCGGGCGCTTCTATTTCTCTTTCAATGCTCATAGATTTCATTGTACAAAGA
ACTTACCATGACCTTACTGTCCTCTCTGAACTTTTACCAAGAAAAACAGATATGGAAAGA
AAGATTGAAATATATAATTTTGCAGCGAGAACCAGACAGTTGTTTATTCGATTACTAGCT
CTTGTAAAATGGGCTAATTCTGCATCAAAAGTTGACAAATCCACTTTAATTATGAGTTTT
CTTGATAAACAATCAATGCTGTTTATTGAAACAGCTGACATGTTGACAAAAATGGCACGT
GAAACCTTAGTTCAAGCTCGATTGCCATCATTTCATATACCTGCAGCAGTTGAAGTTCTA
ACAACTGGATCATACAATCGTTTACCCTTATGCATCAAAGAAAATCTTGTAAAACCTGAT
CCTATTCTTCCACAAGAAGTCGATGCAACTTTAGCTCGTCTCAATCAAGTTATTCAACAT
CGTTTGGTCACTGGAAATCTTTTGCCACAATTGAAGAAATTTAAAATAGATAAGGGTCGA
GTTACGTTTAATGTTCCCAATGAATTTTCTGTTTCATTGACAATGATGGGTGATGGAAAT
GATGTACCATGGAGACTTCTTGATATTGATATTTTAGTTGAAGATAAAGAAACAGGCGAT
GGAAAAGCACTTGTTCATACTTTACAAGTTAACTATATTCATGGACTCATTCAAAGACGC
TTAGTAAATACAAATCAACAATCGGCACTATGCGAGGTATACAATTGTCTTCATTATTTC
TGTCAATCCTTACAATTGGAAGTTTTGTATACTCAAACTTTGCGTTTATGCCGTGATCGA
TTGGATGATAATATACACGTTGAAGAATACGTTGTTGGAAATAAGTTGACTGTTTCATAT
TGGCGTGAATTATCAAACAGTAAAGATGGTAATAAATCTGAAATGCGTTATCGAATTACA
ATACAAGCAGATTCATCGAATTCACTCTCTGTATTTCATTTTCCGTCAACATCGCTTGGC
ACAAAAGATTCAGAAGCAAAAGTTCGTGAGAAAACAGAACTTGCTGTGAAAATGCTTTCA
ATGGAAAGACTATTGGTGCACACTGTCTACTTCAGAAGTGTTGCAAGACTCACAGATATT
CAAAGTGAATTTAAATCATTTATGAAGGATGCAGATTGTAATTTACAAGGTACAACAGCT
ATTCTTACGATACCAATTTTAAATCCATGTCTTCGAGCTGAACAGATCCATATAACTGTA
GATACTCACACAGGTCGCTATCATTGTCATGTTCCAAAACATCAAGATTGTCCAATTATG
ACTGAAATGCAGACTGCTCTTAATACAGATCACTCAAAACTACCTGAATTAGTTTCAGAG
TTGCGTTATTGGATAATAAAAAGAAGATGTGAGAAAACATTACAACATTTACCTGCAACG
GCTAAAGAACGATTACCAATTATTGCATCGTCTGCTCATCCTGCAACGAAAATCGGCCGT
CATAAGATGTTTGTTCAATTACATCGTCATTCAAATGTCATTTTAATTGTAGGATTTAAA
TCAAAAGATTCAAATCCTAATGAAATGGAATATACATTTTATTTAGTTACAATTAAACAC
ATTTCAATCGATGAAAGTTCTGCAGATGAACAATCAATTGATGGAAGTACTAATGGATCA
ACTAGTACTAATAACAGTGGCAATACAAATCAATCAACTGCTGAAATGCCAAAAATGTTT
CTACGTGTTTTAACAATGATTGAATTTGACACTTTTGTTGCAACACATGGATCAGGAACA
AACATTGTTAAAAACGATGATATCAGTTTAAAAAGAAAATTAGGGCCTGAAGGATTTTTC
TTGCCTCCAAATAAGCAAGCAAAAACAATTTATCCAGCTTATTTTATTCCCGAATTGGCT
CACGTTGTTGCAATGTGTGATGAAAAACTTCCTTTCATTTCACTTGCAGAGGAATTTTCA
AAGAGAAATATTCCACATAGTGGATTGCAGAATGAAGCTCATGCTTCTTCATTGGTATTG
AATTTATTGACTCTCCCTTCACCATTTGATATCACAATTCATACAACTGCTCCTGAGAAA
TCTCCAGAAAAGAATAAGATTGATAAAGCAGCAGATGCACCTAAAACCAATCAATACGAG
AAACAATTATTCTTACAGTCATTTGTGACAAAATCAATTTATAATGCTCTAATGAAACGT
CTCTTGTCAATTTCAATTCGAACTCAAGTGAATAAAACAAACTTACCACGTGTCTGGTTG
CTCGAATTAATTTTCTTCAGTACACCATTACAAAGTACACATTATAAAGAACAGGGACAA
AGACGTGCGGTATATTTCCAATATGAAATGCTCAATTCAGAATCTGTTGGAAAAACAGTT
GATTTAATGCTCAATGATTGGATGAAAATTGCTCTTTTATATGCACTTGTTCATGAATTT
GCAGAACTCTATAATGCCGATAAATATAATTTGAAGAATATTGTCACTATAAAATCTCAC
AACTATACAAGTTTGATGTTACAGTATGGATTGCAAAAAGAGTATTGTGTGAATATAGAA
TGGTGCAATGAAACTAAACAATTTCAAATGATTTTCACGGGCAACAATTTGCATGTTAAT
CCTCATTCATTACTAAAAGATCAATTACAATGTCATTTAAATACGCATCATAATTTGGCT
CAAATTGTTCACATTTTAAATGAGACTTATCAGCCACTTTATTCAATTGGTAAGCTTCCA
ATAATTCCTCAACTTGGAACATCGAATGCAAAAATACCAGTTTTGTCTTTTTGCATAATT
CCGCAATCACCAACATTATTGAGAATAGTTTTTCAAGGAACATATTGTTTGGAAATTCGT
TTGAGAGGTGGAGGATTAGTATCAATTCGAGACGGAGCTTATAGTCGATTTGATCGAATA
AATGTTGTAATGGATATAATACCAACTCAAGGCTTAAAAGGATTTTTATCAAAATATGTT
GATGAAAATGCAGTTTACAGACGAAGATCACAATCGGAAGATGACAATCCTCCTTCACCA
ATTCCACAAATGGATGAAACACAATGGACAAGTAGTCATCGTGGTGGTCCTGCAAGTCCC
AGAGATTCAGGACTGCGTTTTGCTGCTCCACAAACTCCTCCTTCGACTTCAAATCCTCAT
ACACCAGCAAGTCCTCATCCTGTTCAACATCAAACACAACAACAACATCCAAATTTCAAC
ATGACTTCACCACCAACTCATATACCACATCCTTCTCCTGGATTCATGCCGCCTTCTTCT
CCTTTAAATCAACCAAGCCCAATGACAATGTCACCTGGACCAAATCTTTATATTCAAGGG
CATGCAGATAGTCCATTTTCACAAATGTCACCAGCAGCAGCTTCAGCTTGGCCTGGCTCG
CCGGGTATGCCGCGTCCTTCACCTAGGCCACCTGGTCAATCACCTGATCATAAATCTCAA
ATGACTCCTCATCATTCAAGAATTTTACCTGCACGTAGTTGGGCTGGAGCTATTCCGACA
CTTTTAACTCAAGAGGCATTTGAAACTTTATGCAAACCATGTGCACTAATGGGAATTCCA
GGTCCAGATATGAGTCCTTTAGAAAGATTTTTAGGATGTGTTTTTATGAAACGACAATTA
CAACGCATTGTCAAAGAAAGTAATTTTGTACAATCGCAAGCAGTTGAACCAGGAGTTATT
TTGTTTAGAGTAGAAGGGCTTCAATGTCAAGTATTTTCAAATCCTGAACATATGCAATCA
TTACATGTTAAAATTACACCAGCTATTGAAATGAAACCTCAATATCAATGGAATCCAGAT
GATTTGTTAACACTAGAGACATATTTTGAGTTGAAAGTTGCTGCACCACCTTATCGACAG
AGCTCATTGTATGGATTTGCAAGACTTTTTAATGTACCACCATACATTTTAAAAGATCTC
ATTCAAATTATTCGTTTGGAACTTAAGCCAGATTTATGTAAGTCAATGGGTTTGCATTTT
AGTGCACAATTGTCTTTGAGAGCAACATTTTCGCAATTACCAATAATTCCACTTGGCGCA
CCATCAGTTGTCAACACAAAAAATAAATTGCTCTTTTTCTTGGAATTAACAAGGATTTCT
GATCAACCACTACCACCCTATCCAATTATAATGCTTCCTTTAATTTATGACATGTTTACA
AATGTTTTAACACTTGCTGAACGTAGAGATGCAAACACACCGATGATAATTATGCAAGCT
GTTAGTTTACAATTGAGAAAATTTAATGAAAAAAGAGGAACTAATACAGGAGAGACATCA
CTTTATGCAGCAGTTCTTGATTTATTAGCAAATCTTTCTTTCCCAATGCCTGGTGCAAAT
ACAATGGTACCAAATTTGCCAAATCAAGGTGTTATTGGTCCAAATCAAGGTCCATTCATG
CCACCTCAAATGCAACAGCAAATGGCACCACAAATGAATCAGATGAATCCTCAAATGAAT
CCAATGGATATGCCGCAAGCTCCACCTCATATGATGAATCAAATGAACATGGGAATGAAT
ATGGGAGGGCCAAACGAATAG

>g13165.t1 Gene=g13165 Length=1546
MPPIEIQQQQMQQANQQMALPNQSGASISLSMLIDFIVQRTYHDLTVLSELLPRKTDMER
KIEIYNFAARTRQLFIRLLALVKWANSASKVDKSTLIMSFLDKQSMLFIETADMLTKMAR
ETLVQARLPSFHIPAAVEVLTTGSYNRLPLCIKENLVKPDPILPQEVDATLARLNQVIQH
RLVTGNLLPQLKKFKIDKGRVTFNVPNEFSVSLTMMGDGNDVPWRLLDIDILVEDKETGD
GKALVHTLQVNYIHGLIQRRLVNTNQQSALCEVYNCLHYFCQSLQLEVLYTQTLRLCRDR
LDDNIHVEEYVVGNKLTVSYWRELSNSKDGNKSEMRYRITIQADSSNSLSVFHFPSTSLG
TKDSEAKVREKTELAVKMLSMERLLVHTVYFRSVARLTDIQSEFKSFMKDADCNLQGTTA
ILTIPILNPCLRAEQIHITVDTHTGRYHCHVPKHQDCPIMTEMQTALNTDHSKLPELVSE
LRYWIIKRRCEKTLQHLPATAKERLPIIASSAHPATKIGRHKMFVQLHRHSNVILIVGFK
SKDSNPNEMEYTFYLVTIKHISIDESSADEQSIDGSTNGSTSTNNSGNTNQSTAEMPKMF
LRVLTMIEFDTFVATHGSGTNIVKNDDISLKRKLGPEGFFLPPNKQAKTIYPAYFIPELA
HVVAMCDEKLPFISLAEEFSKRNIPHSGLQNEAHASSLVLNLLTLPSPFDITIHTTAPEK
SPEKNKIDKAADAPKTNQYEKQLFLQSFVTKSIYNALMKRLLSISIRTQVNKTNLPRVWL
LELIFFSTPLQSTHYKEQGQRRAVYFQYEMLNSESVGKTVDLMLNDWMKIALLYALVHEF
AELYNADKYNLKNIVTIKSHNYTSLMLQYGLQKEYCVNIEWCNETKQFQMIFTGNNLHVN
PHSLLKDQLQCHLNTHHNLAQIVHILNETYQPLYSIGKLPIIPQLGTSNAKIPVLSFCII
PQSPTLLRIVFQGTYCLEIRLRGGGLVSIRDGAYSRFDRINVVMDIIPTQGLKGFLSKYV
DENAVYRRRSQSEDDNPPSPIPQMDETQWTSSHRGGPASPRDSGLRFAAPQTPPSTSNPH
TPASPHPVQHQTQQQHPNFNMTSPPTHIPHPSPGFMPPSSPLNQPSPMTMSPGPNLYIQG
HADSPFSQMSPAAASAWPGSPGMPRPSPRPPGQSPDHKSQMTPHHSRILPARSWAGAIPT
LLTQEAFETLCKPCALMGIPGPDMSPLERFLGCVFMKRQLQRIVKESNFVQSQAVEPGVI
LFRVEGLQCQVFSNPEHMQSLHVKITPAIEMKPQYQWNPDDLLTLETYFELKVAAPPYRQ
SSLYGFARLFNVPPYILKDLIQIIRLELKPDLCKSMGLHFSAQLSLRATFSQLPIIPLGA
PSVVNTKNKLLFFLELTRISDQPLPPYPIIMLPLIYDMFTNVLTLAERRDANTPMIIMQA
VSLQLRKFNEKRGTNTGETSLYAAVLDLLANLSFPMPGANTMVPNLPNQGVIGPNQGPFM
PPQMQQQMAPQMNQMNPQMNPMDMPQAPPHMMNQMNMGMNMGGPNE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g13165.t1 MobiDBLite mobidb-lite consensus disorder prediction 569 592 -
5 g13165.t1 MobiDBLite mobidb-lite consensus disorder prediction 1027 1095 -
6 g13165.t1 MobiDBLite mobidb-lite consensus disorder prediction 1035 1057 -
7 g13165.t1 MobiDBLite mobidb-lite consensus disorder prediction 1147 1185 -
2 g13165.t1 PANTHER PTHR12809:SF2 MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 14 18 1465 0.0
3 g13165.t1 PANTHER PTHR12809 MEDIATOR COMPLEX SUBUNIT 18 1465 0.0
1 g13165.t1 Pfam PF08638 Mediator complex subunit MED14 28 216 1.8E-58

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0016592 mediator complex CC
GO:0003712 transcription coregulator activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values