General information for g13166.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Neuropathy target esterase sws.
Parent gene
- The parent gene g13166 is located on chr_1: 28312221..28313648 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13166 | g13166.t6 | TSS | g13166.t6 | 28309888 | 28309888 |
| chr_1 | g13166 | g13166.t6 | isoform | g13166.t6 | 28310132 | 28312221 |
| chr_1 | g13166 | g13166.t6 | exon | g13166.t6.exon1 | 28310132 | 28310133 |
| chr_1 | g13166 | g13166.t6 | exon | g13166.t6.exon2 | 28310193 | 28310343 |
| chr_1 | g13166 | g13166.t6 | exon | g13166.t6.exon3 | 28310412 | 28310474 |
| chr_1 | g13166 | g13166.t6 | exon | g13166.t6.exon4 | 28311298 | 28312221 |
| chr_1 | g13166 | g13166.t6 | cds | g13166.t6.CDS1 | 28311535 | 28312221 |
| chr_1 | g13166 | g13166.t6 | TTS | g13166.t6 | 28312356 | 28312356 |
Sequences
>g13166.t6 Gene=g13166 Length=1140
CGCAAAAGGCAAGAGAATGGTGCAAAAAGATGACACATTATGGACTACAACTTTTAGACT
TGACATATCCAATTACGTCAATGTTTAGTGGAAAACAGTTCAATAAAACTATTCGAGATA
CATTTGGCGATAATCTCAAAATTGAAGATTTGTGGATACCATACTTCACTTTGACTACAG
ATATCACAGATAGTTGTTCACGAATCCACACTCATGGTCATCTTTGGCGCTATTGTCGTG
CTTCAATGACAATTGCTGGCGTATTTCCTCCTATATGTGATCCAATTGATGGCCACCAAC
TCATTGACGGATGTTATAACAACAATGTTCCGGGTTTAGTTTATGTTTCAATTTTATTTT
ATTAAGAAATAATGTTCCATGAAAATTCATTTTTATTTATTTCATATTTTTCTATACTCA
CATTTTAATATTTCTAAAATTATAGCTGATGTAATGCGAGCTCAAGGAGCAAATATAATT
ATTGCCATTGATGTAGGATCTCAAGATGATACTGATTTGACAGATTATGGGGACGATTTG
AGTGGCTGGTGGGTTTTATATAAGCGTTATAATCCATTTACAGCACCAGTAAAAGTAATG
AGTATACCAGACATACAAAGTCGATTAGCATATGTTTCATGTGTTCGTCAACTCGAACAA
GTAAAGAACAGTGATTACTGCGAATATTTACGACCACCAATAGATAAATATAAAACTTTA
GCATTTGGTTCATTTGATGAGATTAAAGAAGTTGGTTATGCTTATGGTAAAGCATACTTT
GAAAATATTACTAAGAATGGTGGCATATCTAAATTCACAAAATGGTCGTTAAAGAAAAAT
TCGGATGAAAGTCGTGAAACGAGTCCGATCAACCAATCAACTTATACATTCGTTGATTTA
GCACAAATTGTCTGTAAAATTCCAGAGATATGTCAAGATAAAAATGAAGATTTATCAAGT
GAAGACGATTATTTTGCCGGATATGCCTCTGAACCATCAACTTTAAGGTCTAGTGCAAAA
CCACGTCCACTCAGAACAGGCGGTTCTTTGTCATTATCTGAAAATGAATATGAGAGTGAT
GACTCAATTTCAGATGCTGGTACTTCATCACCCATAAAGAAAACAAATGGTGAAATTTAA
>g13166.t6 Gene=g13166 Length=228
MRAQGANIIIAIDVGSQDDTDLTDYGDDLSGWWVLYKRYNPFTAPVKVMSIPDIQSRLAY
VSCVRQLEQVKNSDYCEYLRPPIDKYKTLAFGSFDEIKEVGYAYGKAYFENITKNGGISK
FTKWSLKKNSDESRETSPINQSTYTFVDLAQIVCKIPEICQDKNEDLSSEDDYFAGYASE
PSTLRSSAKPRPLRTGGSLSLSENEYESDDSISDAGTSSPIKKTNGEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13166.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 228 | - |
| 4 | g13166.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 228 | - |
| 1 | g13166.t6 | PANTHER | PTHR14226 | NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER | 2 | 190 | 2.8E-59 |
| 2 | g13166.t6 | PANTHER | PTHR14226:SF23 | PATATIN-LIKE PHOSPHOLIPASE DOMAIN-CONTAINING PROTEIN 7 | 2 | 190 | 2.8E-59 |
| 3 | g13166.t6 | SUPERFAMILY | SSF52151 | FabD/lysophospholipase-like | 3 | 118 | 5.23E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
