General information for g13166.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Neuropathy target esterase sws.
Parent gene
- The parent gene g13166 is located on chr_1: 28312221..28313648 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13166 | g13166.t7 | TSS | g13166.t7 | 28309888 | 28309888 |
| chr_1 | g13166 | g13166.t7 | isoform | g13166.t7 | 28310132 | 28312221 |
| chr_1 | g13166 | g13166.t7 | exon | g13166.t7.exon1 | 28310132 | 28310133 |
| chr_1 | g13166 | g13166.t7 | exon | g13166.t7.exon2 | 28310193 | 28310343 |
| chr_1 | g13166 | g13166.t7 | cds | g13166.t7.CDS1 | 28310220 | 28310343 |
| chr_1 | g13166 | g13166.t7 | exon | g13166.t7.exon3 | 28310412 | 28310474 |
| chr_1 | g13166 | g13166.t7 | cds | g13166.t7.CDS2 | 28310412 | 28310474 |
| chr_1 | g13166 | g13166.t7 | exon | g13166.t7.exon4 | 28311298 | 28311414 |
| chr_1 | g13166 | g13166.t7 | cds | g13166.t7.CDS3 | 28311298 | 28311414 |
| chr_1 | g13166 | g13166.t7 | exon | g13166.t7.exon5 | 28311527 | 28312221 |
| chr_1 | g13166 | g13166.t7 | cds | g13166.t7.CDS4 | 28311527 | 28312221 |
| chr_1 | g13166 | g13166.t7 | TTS | g13166.t7 | 28312356 | 28312356 |
Sequences
>g13166.t7 Gene=g13166 Length=1028
CGCAAAAGGCAAGAGAATGGTGCAAAAAGATGACACATTATGGACTACAACTTTTAGACT
TGACATATCCAATTACGTCAATGTTTAGTGGAAAACAGTTCAATAAAACTATTCGAGATA
CATTTGGCGATAATCTCAAAATTGAAGATTTGTGGATACCATACTTCACTTTGACTACAG
ATATCACAGATAGTTGTTCACGAATCCACACTCATGGTCATCTTTGGCGCTATTGTCGTG
CTTCAATGACAATTGCTGGCGTATTTCCTCCTATATGTGATCCAATTGATGGCCACCAAC
TCATTGACGGATGTTATAACAACAATGTTCCGGCTGATGTAATGCGAGCTCAAGGAGCAA
ATATAATTATTGCCATTGATGTAGGATCTCAAGATGATACTGATTTGACAGATTATGGGG
ACGATTTGAGTGGCTGGTGGGTTTTATATAAGCGTTATAATCCATTTACAGCACCAGTAA
AAGTAATGAGTATACCAGACATACAAAGTCGATTAGCATATGTTTCATGTGTTCGTCAAC
TCGAACAAGTAAAGAACAGTGATTACTGCGAATATTTACGACCACCAATAGATAAATATA
AAACTTTAGCATTTGGTTCATTTGATGAGATTAAAGAAGTTGGTTATGCTTATGGTAAAG
CATACTTTGAAAATATTACTAAGAATGGTGGCATATCTAAATTCACAAAATGGTCGTTAA
AGAAAAATTCGGATGAAAGTCGTGAAACGAGTCCGATCAACCAATCAACTTATACATTCG
TTGATTTAGCACAAATTGTCTGTAAAATTCCAGAGATATGTCAAGATAAAAATGAAGATT
TATCAAGTGAAGACGATTATTTTGCCGGATATGCCTCTGAACCATCAACTTTAAGGTCTA
GTGCAAAACCACGTCCACTCAGAACAGGCGGTTCTTTGTCATTATCTGAAAATGAATATG
AGAGTGATGACTCAATTTCAGATGCTGGTACTTCATCACCCATAAAGAAAACAAATGGTG
AAATTTAA
>g13166.t7 Gene=g13166 Length=332
MTHYGLQLLDLTYPITSMFSGKQFNKTIRDTFGDNLKIEDLWIPYFTLTTDITDSCSRIH
THGHLWRYCRASMTIAGVFPPICDPIDGHQLIDGCYNNNVPADVMRAQGANIIIAIDVGS
QDDTDLTDYGDDLSGWWVLYKRYNPFTAPVKVMSIPDIQSRLAYVSCVRQLEQVKNSDYC
EYLRPPIDKYKTLAFGSFDEIKEVGYAYGKAYFENITKNGGISKFTKWSLKKNSDESRET
SPINQSTYTFVDLAQIVCKIPEICQDKNEDLSSEDDYFAGYASEPSTLRSSAKPRPLRTG
GSLSLSENEYESDDSISDAGTSSPIKKTNGEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13166.t7 | Gene3D | G3DSA:3.40.1090.10 | Cytosolic phospholipase A2 catalytic domain | 11 | 129 | 1.8E-10 |
| 5 | g13166.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 332 | - |
| 4 | g13166.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 332 | - |
| 1 | g13166.t7 | PANTHER | PTHR14226 | NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER | 6 | 293 | 9.9E-111 |
| 2 | g13166.t7 | PANTHER | PTHR14226:SF23 | PATATIN-LIKE PHOSPHOLIPASE DOMAIN-CONTAINING PROTEIN 7 | 6 | 293 | 9.9E-111 |
| 7 | g13166.t7 | ProSiteProfiles | PS51635 | Patatin-like phospholipase (PNPLA) domain profile. | 1 | 106 | 23.354 |
| 3 | g13166.t7 | SUPERFAMILY | SSF52151 | FabD/lysophospholipase-like | 12 | 221 | 1.2E-31 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006629 | lipid metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
