Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative B-cell receptor-associated protein 31.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13169 g13169.t26 TSS g13169.t26 28316629 28316629
chr_1 g13169 g13169.t26 isoform g13169.t26 28316740 28317634
chr_1 g13169 g13169.t26 exon g13169.t26.exon1 28316740 28316764
chr_1 g13169 g13169.t26 exon g13169.t26.exon2 28316833 28316883
chr_1 g13169 g13169.t26 exon g13169.t26.exon3 28316964 28317009
chr_1 g13169 g13169.t26 cds g13169.t26.CDS1 28316980 28317009
chr_1 g13169 g13169.t26 exon g13169.t26.exon4 28317068 28317310
chr_1 g13169 g13169.t26 cds g13169.t26.CDS2 28317068 28317310
chr_1 g13169 g13169.t26 exon g13169.t26.exon5 28317377 28317634
chr_1 g13169 g13169.t26 cds g13169.t26.CDS3 28317377 28317634
chr_1 g13169 g13169.t26 TTS g13169.t26 28317861 28317861

Sequences

>g13169.t26 Gene=g13169 Length=623
ATGTCTCTTACTTGGACTTTAATCGCTGGATTTTTGTATGCTGAAGTTGCTGTTGTTCTT
TTATTAGTATTGCCTGTCTTTAGTGCATCCAAATGGAATCGTTTCTTCAAATCAAGATTT
CTATCTTTTTGCTTGAGGCTATTAGAGAAATGCGTAAATACAGCAGCAGTGAAGAGGAAA
CTACTCTTAATTTGGGAATGCAACATTCAATGAGACTCTTCCGTGCTCAACGCAACTTTT
ACATCTCTGGGTTTGCCATTTTCTTGTCATTGGTCATTAGACGATTGATTATTTTAATCA
CAACACAAGCATCGTTAATTGCAAATTCTGAAGCAAGCATGAAACAAGCACAGTCCGCAA
CACAGGCTGCTCGTCATTTAATGGCCGAAAAGAAAACTGATGGTGGTTCTGCTAACACTG
CTAATAGTGATAATAAAGCTGATGATGATAAGGAAAAATTACAAAACAAGATTAAAGAAT
TGGAAGCTGAATTGAAAAAGGAACGAAAGGATAAAGAAGCATTAAAATCGCAAGCTGATT
CACTCAACAGAGAATATGATCGATTGACAGAAGAGTACAGCAAATTGCAGAACAAGCAGG
CTGCTGGTGACAAGTCAGACTAA

>g13169.t26 Gene=g13169 Length=176
MESFLQIKISIFLLEAIREMRKYSSSEEETTLNLGMQHSMRLFRAQRNFYISGFAIFLSL
VIRRLIILITTQASLIANSEASMKQAQSATQAARHLMAEKKTDGGSANTANSDNKADDDK
EKLQNKIKELEAELKKERKDKEALKSQADSLNREYDRLTEEYSKLQNKQAAGDKSD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g13169.t26 Coils Coil Coil 113 168 -
7 g13169.t26 Gene3D G3DSA:1.20.5.110 - 106 165 9.2E-6
6 g13169.t26 MobiDBLite mobidb-lite consensus disorder prediction 84 124 -
3 g13169.t26 PANTHER PTHR12701:SF50 LP10861P 11 170 1.0E-43
4 g13169.t26 PANTHER PTHR12701 BCR-ASSOCIATED PROTEIN, BAP 11 170 1.0E-43
2 g13169.t26 Pfam PF05529 Bap31/Bap29 transmembrane region 6 81 3.0E-21
1 g13169.t26 Pfam PF18035 Bap31/Bap29 cytoplasmic coiled-coil domain 125 176 6.0E-18
9 g13169.t26 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 48 -
11 g13169.t26 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 49 69 -
10 g13169.t26 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 70 176 -
5 g13169.t26 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 48 67 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006886 intracellular protein transport BP
GO:0005783 endoplasmic reticulum CC
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values