Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative B-cell receptor-associated protein 31.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13169 g13169.t28 TSS g13169.t28 28316629 28316629
chr_1 g13169 g13169.t28 isoform g13169.t28 28316740 28317634
chr_1 g13169 g13169.t28 exon g13169.t28.exon1 28316740 28316764
chr_1 g13169 g13169.t28 exon g13169.t28.exon2 28316833 28316873
chr_1 g13169 g13169.t28 cds g13169.t28.CDS1 28316845 28316873
chr_1 g13169 g13169.t28 exon g13169.t28.exon3 28316971 28317310
chr_1 g13169 g13169.t28 cds g13169.t28.CDS2 28316971 28317310
chr_1 g13169 g13169.t28 exon g13169.t28.exon4 28317377 28317634
chr_1 g13169 g13169.t28 cds g13169.t28.CDS3 28317377 28317634
chr_1 g13169 g13169.t28 TTS g13169.t28 28317861 28317861

Sequences

>g13169.t28 Gene=g13169 Length=664
ATGTCTCTTACTTGGACTTTAATCGCTGGATTTTTGTATGCTGAAGTTGCTGTTGTTCTT
TTATTATGCATCCAAATGGAATCGTTTCTTCAAATCAAGATTTCTGTCAGCTCTCTCTCG
GCAAGCACAGATTTACTTTTATTTGATGCTTGGTGTTTTGGTAATCTTTTTGCTTGAGGC
TATTAGAGAAATGCGTAAATACAGCAGCAGTGAAGAGGAAACTACTCTTAATTTGGGAAT
GCAACATTCAATGAGACTCTTCCGTGCTCAACGCAACTTTTACATCTCTGGGTTTGCCAT
TTTCTTGTCATTGGTCATTAGACGATTGATTATTTTAATCACAACACAAGCATCGTTAAT
TGCAAATTCTGAAGCAAGCATGAAACAAGCACAGTCCGCAACACAGGCTGCTCGTCATTT
AATGGCCGAAAAGAAAACTGATGGTGGTTCTGCTAACACTGCTAATAGTGATAATAAAGC
TGATGATGATAAGGAAAAATTACAAAACAAGATTAAAGAATTGGAAGCTGAATTGAAAAA
GGAACGAAAGGATAAAGAAGCATTAAAATCGCAAGCTGATTCACTCAACAGAGAATATGA
TCGATTGACAGAAGAGTACAGCAAATTGCAGAACAAGCAGGCTGCTGGTGACAAGTCAGA
CTAA

>g13169.t28 Gene=g13169 Length=208
MLKLLLFFYYASKWNRFFKSRFLSALSRQAQIYFYLMLGVLVIFLLEAIREMRKYSSSEE
ETTLNLGMQHSMRLFRAQRNFYISGFAIFLSLVIRRLIILITTQASLIANSEASMKQAQS
ATQAARHLMAEKKTDGGSANTANSDNKADDDKEKLQNKIKELEAELKKERKDKEALKSQA
DSLNREYDRLTEEYSKLQNKQAAGDKSD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g13169.t28 Coils Coil Coil 145 200 -
8 g13169.t28 Gene3D G3DSA:1.20.5.110 - 138 197 1.3E-5
7 g13169.t28 MobiDBLite mobidb-lite consensus disorder prediction 119 155 -
3 g13169.t28 PANTHER PTHR12701:SF50 LP10861P 4 202 2.0E-59
4 g13169.t28 PANTHER PTHR12701 BCR-ASSOCIATED PROTEIN, BAP 4 202 2.0E-59
2 g13169.t28 Pfam PF05529 Bap31/Bap29 transmembrane region 4 113 2.7E-28
1 g13169.t28 Pfam PF18035 Bap31/Bap29 cytoplasmic coiled-coil domain 157 208 8.2E-18
12 g13169.t28 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 31 -
14 g13169.t28 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 49 -
10 g13169.t28 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 50 80 -
13 g13169.t28 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 81 101 -
11 g13169.t28 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 102 208 -
6 g13169.t28 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 46 -
5 g13169.t28 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 80 99 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006886 intracellular protein transport BP
GO:0005783 endoplasmic reticulum CC
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values