Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative B-cell receptor-associated protein 31.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13169 g13169.t34 TSS g13169.t34 28316629 28316629
chr_1 g13169 g13169.t34 isoform g13169.t34 28316740 28317634
chr_1 g13169 g13169.t34 exon g13169.t34.exon1 28316740 28316764
chr_1 g13169 g13169.t34 cds g13169.t34.CDS1 28316740 28316764
chr_1 g13169 g13169.t34 exon g13169.t34.exon2 28316845 28316883
chr_1 g13169 g13169.t34 cds g13169.t34.CDS2 28316845 28316883
chr_1 g13169 g13169.t34 exon g13169.t34.exon3 28316964 28317310
chr_1 g13169 g13169.t34 cds g13169.t34.CDS3 28316964 28317310
chr_1 g13169 g13169.t34 exon g13169.t34.exon4 28317377 28317634
chr_1 g13169 g13169.t34 cds g13169.t34.CDS4 28317377 28317634
chr_1 g13169 g13169.t34 TTS g13169.t34 28317861 28317861

Sequences

>g13169.t34 Gene=g13169 Length=669
ATGTCTCTTACTTGGACTTTAATCGATGCTGAAGTTGCTGTTGTTCTTTTATTAGTATTG
CCTGTCTTTAGTGCATCCAAATGGAATCGTTTCTTCAAATCAAGATTTCTGTCAGCTCTC
TCTCGGCAAGCACAGATTTACTTTTATTTGATGCTTGGTGTTTTGGTAATCTTTTTGCTT
GAGGCTATTAGAGAAATGCGTAAATACAGCAGCAGTGAAGAGGAAACTACTCTTAATTTG
GGAATGCAACATTCAATGAGACTCTTCCGTGCTCAACGCAACTTTTACATCTCTGGGTTT
GCCATTTTCTTGTCATTGGTCATTAGACGATTGATTATTTTAATCACAACACAAGCATCG
TTAATTGCAAATTCTGAAGCAAGCATGAAACAAGCACAGTCCGCAACACAGGCTGCTCGT
CATTTAATGGCCGAAAAGAAAACTGATGGTGGTTCTGCTAACACTGCTAATAGTGATAAT
AAAGCTGATGATGATAAGGAAAAATTACAAAACAAGATTAAAGAATTGGAAGCTGAATTG
AAAAAGGAACGAAAGGATAAAGAAGCATTAAAATCGCAAGCTGATTCACTCAACAGAGAA
TATGATCGATTGACAGAAGAGTACAGCAAATTGCAGAACAAGCAGGCTGCTGGTGACAAG
TCAGACTAA

>g13169.t34 Gene=g13169 Length=222
MSLTWTLIDAEVAVVLLLVLPVFSASKWNRFFKSRFLSALSRQAQIYFYLMLGVLVIFLL
EAIREMRKYSSSEEETTLNLGMQHSMRLFRAQRNFYISGFAIFLSLVIRRLIILITTQAS
LIANSEASMKQAQSATQAARHLMAEKKTDGGSANTANSDNKADDDKEKLQNKIKELEAEL
KKERKDKEALKSQADSLNREYDRLTEEYSKLQNKQAAGDKSD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13169.t34 Coils Coil Coil 159 214 -
9 g13169.t34 Gene3D G3DSA:1.20.5.110 - 152 211 1.4E-5
8 g13169.t34 MobiDBLite mobidb-lite consensus disorder prediction 133 170 -
3 g13169.t34 PANTHER PTHR12701:SF50 LP10861P 1 216 5.0E-68
4 g13169.t34 PANTHER PTHR12701 BCR-ASSOCIATED PROTEIN, BAP 1 216 5.0E-68
2 g13169.t34 Pfam PF05529 Bap31/Bap29 transmembrane region 1 127 2.2E-35
1 g13169.t34 Pfam PF18035 Bap31/Bap29 cytoplasmic coiled-coil domain 171 222 9.2E-18
12 g13169.t34 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 6 -
15 g13169.t34 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 7 26 -
14 g13169.t34 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 27 45 -
17 g13169.t34 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 46 63 -
11 g13169.t34 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 64 94 -
16 g13169.t34 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 95 115 -
13 g13169.t34 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 116 222 -
6 g13169.t34 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 26 -
7 g13169.t34 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 46 63 -
5 g13169.t34 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 95 114 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006886 intracellular protein transport BP
GO:0005783 endoplasmic reticulum CC
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values