General information for g13169.t74
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13169 is located on chr_1: 28316986..28327569 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13169 | g13169.t74 | TSS | g13169.t74 | 28316629 | 28316629 |
| chr_1 | g13169 | g13169.t74 | isoform | g13169.t74 | 28316986 | 28317868 |
| chr_1 | g13169 | g13169.t74 | exon | g13169.t74.exon1 | 28316986 | 28317310 |
| chr_1 | g13169 | g13169.t74 | cds | g13169.t74.CDS1 | 28317050 | 28317310 |
| chr_1 | g13169 | g13169.t74 | exon | g13169.t74.exon2 | 28317404 | 28317868 |
| chr_1 | g13169 | g13169.t74 | cds | g13169.t74.CDS2 | 28317404 | 28317634 |
| chr_1 | g13169 | g13169.t74 | TTS | g13169.t74 | 28317861 | 28317861 |
Sequences
>g13169.t74 Gene=g13169 Length=790
TCGTTTCTTCAAATCAAGATTTCTGTCAGCTCTCTCTCGGCAAGCACAGATTTACTTTTA
TTTGATGCTTGGTGTTTTGGTAATCTTTTTGCTTGAGGCTATTAGAGAAATGCGTAAATA
CAGCAGCAGTGAAGAGGAAACTACTCTTAATTTGGGAATGCAACATTCAATGAGACTCTT
CCGTGCTCAACGCAACTTTTACATCTCTGGGTTTGCCATTTTCTTGTCATTGGTCATTAG
ACGATTGATTATTTTAATCACAACACAAGCATCGTTAATTGCAAATTCTGAAGCAAGCAT
GAAACAAGCACAGTCCGCAACACAGAAAACTGATGGTGGTTCTGCTAACACTGCTAATAG
TGATAATAAAGCTGATGATGATAAGGAAAAATTACAAAACAAGATTAAAGAATTGGAAGC
TGAATTGAAAAAGGAACGAAAGGATAAAGAAGCATTAAAATCGCAAGCTGATTCACTCAA
CAGAGAATATGATCGATTGACAGAAGAGTACAGCAAATTGCAGAACAAGCAGGCTGCTGG
TGACAAGTCAGACTAAGCTATTCGAATATTTGTGCATCACGTACTTGTCATTTTTTCTCA
TGAAATTTTAATACACTGTATGAGGTTCTAATTCTTCTTCTTCTTACCTTTAACCGATGA
TTCACTTTAAAAACAAAATATGAAATAAATATTATTAGCTTTGATAATTTATATTTTCCT
AATGTATGTTTCTTACAAAAGAGAGAAAAAAGAGAATTAAACAATAAAACTTGATAAAAA
AACGAAAAAA
>g13169.t74 Gene=g13169 Length=163
MLGVLVIFLLEAIREMRKYSSSEEETTLNLGMQHSMRLFRAQRNFYISGFAIFLSLVIRR
LIILITTQASLIANSEASMKQAQSATQKTDGGSANTANSDNKADDDKEKLQNKIKELEAE
LKKERKDKEALKSQADSLNREYDRLTEEYSKLQNKQAAGDKSD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g13169.t74 | Coils | Coil | Coil | 100 | 155 | - |
| 7 | g13169.t74 | Gene3D | G3DSA:1.20.5.110 | - | 93 | 152 | 7.9E-6 |
| 5 | g13169.t74 | MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 111 | - |
| 6 | g13169.t74 | MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 99 | - |
| 3 | g13169.t74 | PANTHER | PTHR12701:SF50 | LP10861P | 1 | 157 | 9.0E-44 |
| 4 | g13169.t74 | PANTHER | PTHR12701 | BCR-ASSOCIATED PROTEIN, BAP | 1 | 157 | 9.0E-44 |
| 2 | g13169.t74 | Pfam | PF05529 | Bap31/Bap29 transmembrane region | 1 | 77 | 3.2E-22 |
| 1 | g13169.t74 | Pfam | PF18035 | Bap31/Bap29 cytoplasmic coiled-coil domain | 112 | 163 | 5.2E-18 |
| 11 | g13169.t74 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 12 | g13169.t74 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 13 | g13169.t74 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 10 | - |
| 15 | g13169.t74 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 11 | 22 | - |
| 10 | g13169.t74 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 45 | - |
| 14 | g13169.t74 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 46 | 73 | - |
| 9 | g13169.t74 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 74 | 163 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006886 | intracellular protein transport | BP |
| GO:0005783 | endoplasmic reticulum | CC |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
