General information for g13174.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as V-type proton ATPase subunit d 1.
Parent gene
- The parent gene g13174 is located on chr_1: 28325659..28327052 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13174 | g13174.t9 | TSS | g13174.t9 | 28325215 | 28325215 |
| chr_1 | g13174 | g13174.t9 | isoform | g13174.t9 | 28325296 | 28326616 |
| chr_1 | g13174 | g13174.t9 | exon | g13174.t9.exon1 | 28325296 | 28325413 |
| chr_1 | g13174 | g13174.t9 | cds | g13174.t9.CDS1 | 28325296 | 28325413 |
| chr_1 | g13174 | g13174.t9 | exon | g13174.t9.exon2 | 28325634 | 28326616 |
| chr_1 | g13174 | g13174.t9 | cds | g13174.t9.CDS2 | 28325634 | 28326406 |
| chr_1 | g13174 | g13174.t9 | TTS | g13174.t9 | 28327190 | 28327190 |
Sequences
>g13174.t9 Gene=g13174 Length=1101
ATGGGCTTTATGTTTAATATCGATGCAGGATATTTGGAAGGTTTGTGCCGTGGATTCAAG
TGTGGAATTCTCAAGCAATCGGACTATTTAAATCTTGTGCAGTGCGAAACTTTGGAAGAT
TTAAAACTCCATCTGCAAGGCACAGATTATGGACAATTTCTTGCTAATGAACCATCGCCA
CTCGCTGTTTCAGTAATCGATGATAAGCTACGCGAAAAACTTGTAATTGAATTCCAACAT
ATGAGAAATCATGCAGTTGAGCCGCTATCGACATTCTTGGATTTTATCACATACAGTTAT
ATGATTGACAACATTATTCTTCTCATTACTGGAACCCTTCATCAACGACCCATTTCTGAA
TTAATTCCAAAGTGTCATCCATTGGGAAGTTTTGAACAAATGGAAGCAATTCATGTTGCA
GCTACTCCAGCAGAATTGTATAATGCTGTTTTAGTTGACACACCATTGGCACCATTCTTT
GTTGATTGCATCAGTGAACAAGATTTAGATGAGATGAATATTGAAATCATTAGAAATACG
TTATACAAGGCCTATTTGGAGGCATTTTACGATTTTTGTAAAGGTCTCGGTGGAACAACA
GCTGATGTAATGTGTGAAATTCTTGCTTTCGAAGCTGATCGTCGTGCCATCATTATCACA
ATTAACTCGTTCGGAACAGAATTGTCAAAGGATGATAGACAAAAGTTGTATCCACGCTGT
GGAAAAATGTTTCCAGATGGTCTTGCTGCACTCGCTCGTGCTGATGATTACGAACAAGTT
AAAGCTGTTGCTGAGTATTATGCAGAGTATGCTGCTCTTTTTGATGGATCAGGCAACAAT
CCAGGTGACAAGACATTAGAAGACAAATTCTTTGAACATGAGGTGAGTTAATGAAAAAAG
ATTTTTGAAAAATAAATTTAAAATTTTTTACTTTTTAAGGTCAAACTTAACGTTTATGCA
TTTATGCAACAATTCCACTTTGGAGTATTCTATTCCTATTTAAAGCTCAAAGAACAAGAG
TGCCGCAATATTGTATGGATTGCTGAATGTGTCGCACAAAAGCATCGTGCTAAAATTGAC
AACTATATTCCAATCTTTTAA
>g13174.t9 Gene=g13174 Length=296
MGFMFNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGQFLANEPSP
LAVSVIDDKLREKLVIEFQHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISE
LIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNT
LYKAYLEAFYDFCKGLGGTTADVMCEILAFEADRRAIIITINSFGTELSKDDRQKLYPRC
GKMFPDGLAALARADDYEQVKAVAEYYAEYAALFDGSGNNPGDKTLEDKFFEHEVS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g13174.t9 | PANTHER | PTHR11028:SF3 | V-TYPE PROTON ATPASE SUBUNIT D 1 | 3 | 295 | 0 |
| 3 | g13174.t9 | PANTHER | PTHR11028 | VACUOLAR ATP SYNTHASE SUBUNIT AC39 | 3 | 295 | 0 |
| 1 | g13174.t9 | Pfam | PF01992 | ATP synthase (C/AC39) subunit | 12 | 295 | 0 |
| 4 | g13174.t9 | SUPERFAMILY | SSF103486 | V-type ATP synthase subunit C | 10 | 295 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0033179 | proton-transporting V-type ATPase, V0 domain | CC |
| GO:1902600 | proton transmembrane transport | BP |
| GO:0015078 | proton transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
