General information for g13175.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family A member 3.
Parent gene
- The parent gene g13175 is located on chr_1: 28334804..28336766 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13175 | g13175.t1 | TSS | g13175.t1 | 28327560 | 28327560 |
| chr_1 | g13175 | g13175.t1 | isoform | g13175.t1 | 28328102 | 28334804 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon1 | 28328102 | 28328704 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS1 | 28328102 | 28328704 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon2 | 28329294 | 28330811 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS2 | 28329294 | 28330811 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon3 | 28330871 | 28330934 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS3 | 28330871 | 28330934 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon4 | 28330995 | 28331274 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS4 | 28330995 | 28331274 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon5 | 28331338 | 28331423 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS5 | 28331338 | 28331423 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon6 | 28331489 | 28331996 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS6 | 28331489 | 28331996 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon7 | 28332057 | 28332126 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS7 | 28332057 | 28332126 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon8 | 28332192 | 28333039 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS8 | 28332192 | 28333039 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon9 | 28333538 | 28334216 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS9 | 28333538 | 28334216 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon10 | 28334283 | 28334328 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS10 | 28334283 | 28334328 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon11 | 28334388 | 28334553 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS11 | 28334388 | 28334553 |
| chr_1 | g13175 | g13175.t1 | exon | g13175.t1.exon12 | 28334612 | 28334804 |
| chr_1 | g13175 | g13175.t1 | cds | g13175.t1.CDS12 | 28334612 | 28334804 |
| chr_1 | g13175 | g13175.t1 | TTS | g13175.t1 | NA | NA |
Sequences
>g13175.t1 Gene=g13175 Length=5061
ATGACGACGTCAGCGTGGGATAAATTTCTTTTGCTATCATGGAAGAATTGGCTGATACAA
ATTCGACATCCAATTCAAACTGTGTTAGAAGTAATGATACCAATTTTAGTTTGTGCATTT
CTGATTCTCATCAGAGGACTTGTTGATGTGTCAGAAGAAACAGAAGCTTTAAAATTTCCT
CCTATTGTAACAAATGAGTTTGTGGAACGAAATTTCACATATCAACGTGTTATTGCCTAT
TCGCCAAATAATCCTGTTTTAAACCAAATTGTGAAGAATGCTGCTGATCAAATATTTAAT
TTCAGTCACATATCATTTTCAAATCAAACTGAATTAGAAGGGAATGCACTAACTGCCTCT
CCTTTTGTTAGCATTGAATTTGATCAAAGCTTAGCAAACCTTCAATCAATTAAAGATTTT
CCAAATAATATTCATTATGCATTAAGATTTCCAGCAGAATTGCGTACAGAAAATGAAATT
TTGAATGAAATGGGAGGATTTACAAGCAATTGGGCAACAAATATTCGTTTTGGCCTAGAC
TTTCTTCCGGGACCAAGAAACGGAAACGAATTCGACGGAGGTGAACCGCCAGGATACATC
AGACAAGGATTTATTTTCATTCAAAATTTAATTGATCGTGAAATAATAAGAGCTAAAATT
GGTAATCGATCATTTCAATTCCCTGACTTGTACATACAAAGAATGCCGTTTCCTGAGTAT
GTTACTGATGTTCTTGGACTAGTGATGGAATTTGCTATTCCTTTAATTTTCTTGGTTGCT
TTTATGGTCAGTGCGATCAACAATATTAAATATATAGCTATCGAAAGAGAATTACAATTG
AAAGAAGCAATGAAAATTATGGGACTACCAGGTTATATGCATTGGATCGCATGGTTTACA
AAATGTATGATATTTCAAATAGTTATAATTTCTGTAATTACTGGGCTAGTCAAAATACCA
TTCGAGTCAAAGGGTGGTCTTTCAGTTTTTACTCATACCGAATGGTCAGTGCTGTGGGTT
TTCTTTTTTCTTTACGCTATGGCAGGAGTCACATTTTCATTTATGTTCTCAACATTCTTC
GCAAAAGCTAATACGTGCAGCATTGTAGGCGCAATTGTTTGGTTAATGATGCTTCAACCT
TACAGTATAATGAACATGAATTATTCAAACATAGGTCTCGGACCAAAACTTGGTGCCTCT
TTGCTAGTTAATACTGGCATGGGATTTGGTTTTAAAGTTCTTGGAAGATATGAGAGCGCA
TTAATTGGTGTCAATTGGAATAATCTTTTTCAACCTGTCACACCTGATGATGATCTTACA
CTTGGATATATAATGTTAGTTCTTCTTGCAGCATCTGTGCTTCAAATGCTCATCGCTTTA
TATGTAGAAAAAATAAAACCAGGTGAATATGGTGTACCAGAAAAATGGTATTTCCCATTA
TCTCCAAGCTTTTGGTGTGGCGGCAAAGCAACTTCAAACTCAGAAATTCCCGATATGCCC
AAACACAATCCTAATTATGAAAGCGAACCTGTTGGTAAAAATGCTGGAATCAAAATTCGT
GGGTTAAGAAAAACATATAACAACAAAGTTGCAGTTGAAGGATTAAATTTGAATATTTAT
GAAGATCAAATTACAATTTTACTCGGACATAATGGAGCAGGCAAAAGTACAACAATGTCG
ATGTTAACTGGTCTATTCCCACCAACATCTGGCACTGCTTACATCAACGGTCATGATATA
AGATCAGATTTAAATTCAGTTAGAGGCTCTTTGGGTTTATGTCCTCAACACAATGTTTTA
TTTAATGAGCTTACAGTTAGAGAACATATAATTTTCTTCACAAAACTTAAAGGCATAAAA
GACAAGCAAGAAATTGAGCAAGAAATTCGAAAGTATGTGAACCTCTTAGGACTCGGACCA
AAAATGAATGCTCAAAGCAAAACACTTAGTGGTGGAATGAAACGAAAATTGTCAATAGGA
ATCGCCTTATGTGGCGATTCAAAAATTGTCATGTGTGATGAACCTTCAAGCGGAATGGAT
CCAGGAGCTAGACGAGCTTTGTGGGATATTTTAATTCAAGAGAAAAAAGGCAGAACAATT
TTGTTAACAACTCATTTTATGGAAGAGGCTGAAGTACTTGGTGATAGAATAGTAATTATG
GCTGAGGGAAAACTTAAAACTGTTGGTTCACAATATTTTCTTAAGAAACGCTTCGGGGTT
GGGTATCGTCTTATTTGTGTCAAAAAACCAACATGCAATCCACAAGTAGTGACAAATTTC
CTCTCAAAATATATTCCCGAAATTGTCATTGAAACGAATATTGGCACTGAATTGACTTAT
GTTCTTAATCAATCATATGTGAGAAAATTTAAAATGATTTTCAAAGATCTAGAGGATAAT
CAAGAAACATTGAAAATTTTAAGTTTTGGCTTATCATTAACTACAATGGAAGAAGTTTTT
CTCAAAGTCGGAATTGATTCAAATACACTTGATGTAGAAGAAAGATATGAGGGAATTTCA
AATGGCAGCTCTAATGGTTCTAATGACGCATTAAAATTAATTAATACAAACCTCACATAT
GGCATCTGTTTGTATTTCAATCAAATACTTGCAATGGCTATGAAAAAATTCTTCTACATG
ATTCGAAACTATATGATGCTGTTTATACAATTTTTCATTCCTGCCTTATTTATCGTCATC
ACAATGTTGATGGAAGATCTTTTTGATGGTGACCAAGATTTACCAGAATTACAAATTTCT
TTCCGTGAATATATTAGAACAATAACGACTTATGAGATTGCGGGAAATCAAAATATATTT
GCAAGTTATAAAGCATTTTTCGATGATTTGCCAGATGAGCATGTATTGAGAACCACAGAA
GAAAATTTAAATCTAGAAGATACAATATTGAAAGAATATCGATTGTCGTTATCAAATGTC
AATTTGAATTATATGGTCGGAACAACATTCAATGAGTCATCAATAACTGCATGGTTCAAC
AATCAAGCTTTTCATACAGCACCGCTAACGATAAATTTGATTAATAATGCTATACTGAAA
TCGCTTACTGGCAATCTTTCAACCATTAGCATTTCAAACAAACCATTACCTTTCTCATTA
AATACGAGATTGATTCAATTACAAGCGGGCAATAACCTTGGCTTTAATATCGCATTGAAT
ACAGGATTTTCTATGGCACTTGCTACATCATTATTTGTAATGTTTTACATTAAAGAAAGA
GTCACAAAGGCAAAACTTCTTCAGATTGTGTCTGGCGTCAATAAATTCATCTTTTGGCTA
GTCGCCTTCGTTATCGATTACGCAATCTTCTTCCTCATTGCGCTCGTCTACATTGGAGTA
CTTGCAGCTTATCAGAAAGAAGGTCTCGCGACTTTTGAAGAATTAGGAAGAAATTCGATT
ATATTATTGCTTTTTGGATTTGCTGTTTTACCATTCACTTACATGATTTCATTTGGCTTC
AGAGTGCCTACCACAGGATTAGTTGTTTTAGCTATTGGATTTATTGTTTCGGGAACACTT
TTCTATACAGTTTATTTCGTTCTCATCAGTGATTTCTTAGATTTGAGATGGATAGCAGAA
CCACTTGGATGGACATTTTTAATTTTCCCTCATTTTTCACTCACACAAGGCCTAAGTAAC
ATCAATGTAAAACAATCAACTTTGTCAACATGTGACAGACAATGTGCAACTGTATCATTT
TGTAATATAGAAATGATTTGTGAATCTGACATACTACGTTGTGGTGAAGAATTGCCAATA
GATATGCCAAATAGAGAATTTTTTTGCAATCTTCAAAGAAATTGCTGCAATAGAAATTTT
TATACATTTGAAGAGACCGGTATAGGAAGAGCGATAGTTGCTCTCATTGTAGTCGGAATT
GCATCATTTATCGTTTTGTTCATTCTTGAGTATAAACTCATTCAAATGATAATCAATCGA
TGCCGGAAAACTAAAGTATTGAAAAACATTCCCGAATCAGAGGAAAATTTCATTGATGCT
GATGTATTGGCTGAAAAAGACAAAATCAGAATGTATACACAATATTTAGTTGCAAAAAAT
AATTTAGTGATGAAAAATTTTACAAAATTTTATGGAAATTTTATGGCAGTCAATCAACTT
TGCGTAGGTGTGGATAGAGCTGAATGCTTTGGACTGTTAGGTGTGAACGGCGCAGGCAAA
ACATCAGCATTTAAGATGTTAGTTGGTGATGAAAGCATTTCAGCTGGTGATGCATGGGTT
GATGGTTTCAGCATTCGAACTCAGTTAAATAAAGTTCATAAACGAATTGGATATTGCCCA
CAATTTGATGCTCTCATTGAAGATCTTACTGGAAGAGAAACATTGAAAATTTTTGCACTT
TTGAGGGGAATTTCTCGTGATAGCATTAATCAAATTGCAGAACAATTGGCAGAAGATTTA
AATTTTACAAAGCATCTTGATAAGAAGACAAAGGAATATAGTGGAGGAAATAAAAGAAAA
TTGAGCACAGCATTGACATTAATTGGGGATCCATCAGTTATTTATTTAGATGAACCTACA
AGTGGGATGGATGTAGGTGCAAGAAGACAATTGTGGAATATGGTAATTAAAGCAAGAAAC
TCAGGAAAATCAATCGTTTTGACTTCGCATAGCATGGAAGAGTGTGAAGTATTATGTAAC
AGACTTGCTATCATGGTTAATGGTGAATTCAAATGCTTAGGTTCAGTTCAGCATTTGAAG
AATAAATTTTCTAAAGGATTTTTCCTCACAATCAAAATTGGAAATAATGATGACGTTCAT
ATGCTGAATCGAAAAATAATCGTCGTTAAAGATTTTGTTGCAAATACATTTAGCGGTGCA
ATACTTAAGGAAGAATTTATGGATTTACTTTCATATCACATACCAACTGAACAACTAAAA
TGGTCAAATATTTTTGGTATAATGGAAGATGCAAAGCAAAAATTAGGCATCTCAGATTAC
TCTTTGGGTCAAACATCCCTTGAACAAGTCTTTTTGTATTTCACAAAAACTCAGAGAATT
TCAGATAAGAAAGACAAATAA
>g13175.t1 Gene=g13175 Length=1686
MTTSAWDKFLLLSWKNWLIQIRHPIQTVLEVMIPILVCAFLILIRGLVDVSEETEALKFP
PIVTNEFVERNFTYQRVIAYSPNNPVLNQIVKNAADQIFNFSHISFSNQTELEGNALTAS
PFVSIEFDQSLANLQSIKDFPNNIHYALRFPAELRTENEILNEMGGFTSNWATNIRFGLD
FLPGPRNGNEFDGGEPPGYIRQGFIFIQNLIDREIIRAKIGNRSFQFPDLYIQRMPFPEY
VTDVLGLVMEFAIPLIFLVAFMVSAINNIKYIAIERELQLKEAMKIMGLPGYMHWIAWFT
KCMIFQIVIISVITGLVKIPFESKGGLSVFTHTEWSVLWVFFFLYAMAGVTFSFMFSTFF
AKANTCSIVGAIVWLMMLQPYSIMNMNYSNIGLGPKLGASLLVNTGMGFGFKVLGRYESA
LIGVNWNNLFQPVTPDDDLTLGYIMLVLLAASVLQMLIALYVEKIKPGEYGVPEKWYFPL
SPSFWCGGKATSNSEIPDMPKHNPNYESEPVGKNAGIKIRGLRKTYNNKVAVEGLNLNIY
EDQITILLGHNGAGKSTTMSMLTGLFPPTSGTAYINGHDIRSDLNSVRGSLGLCPQHNVL
FNELTVREHIIFFTKLKGIKDKQEIEQEIRKYVNLLGLGPKMNAQSKTLSGGMKRKLSIG
IALCGDSKIVMCDEPSSGMDPGARRALWDILIQEKKGRTILLTTHFMEEAEVLGDRIVIM
AEGKLKTVGSQYFLKKRFGVGYRLICVKKPTCNPQVVTNFLSKYIPEIVIETNIGTELTY
VLNQSYVRKFKMIFKDLEDNQETLKILSFGLSLTTMEEVFLKVGIDSNTLDVEERYEGIS
NGSSNGSNDALKLINTNLTYGICLYFNQILAMAMKKFFYMIRNYMMLFIQFFIPALFIVI
TMLMEDLFDGDQDLPELQISFREYIRTITTYEIAGNQNIFASYKAFFDDLPDEHVLRTTE
ENLNLEDTILKEYRLSLSNVNLNYMVGTTFNESSITAWFNNQAFHTAPLTINLINNAILK
SLTGNLSTISISNKPLPFSLNTRLIQLQAGNNLGFNIALNTGFSMALATSLFVMFYIKER
VTKAKLLQIVSGVNKFIFWLVAFVIDYAIFFLIALVYIGVLAAYQKEGLATFEELGRNSI
ILLLFGFAVLPFTYMISFGFRVPTTGLVVLAIGFIVSGTLFYTVYFVLISDFLDLRWIAE
PLGWTFLIFPHFSLTQGLSNINVKQSTLSTCDRQCATVSFCNIEMICESDILRCGEELPI
DMPNREFFCNLQRNCCNRNFYTFEETGIGRAIVALIVVGIASFIVLFILEYKLIQMIINR
CRKTKVLKNIPESEENFIDADVLAEKDKIRMYTQYLVAKNNLVMKNFTKFYGNFMAVNQL
CVGVDRAECFGLLGVNGAGKTSAFKMLVGDESISAGDAWVDGFSIRTQLNKVHKRIGYCP
QFDALIEDLTGRETLKIFALLRGISRDSINQIAEQLAEDLNFTKHLDKKTKEYSGGNKRK
LSTALTLIGDPSVIYLDEPTSGMDVGARRQLWNMVIKARNSGKSIVLTSHSMEECEVLCN
RLAIMVNGEFKCLGSVQHLKNKFSKGFFLTIKIGNNDDVHMLNRKIIVVKDFVANTFSGA
ILKEEFMDLLSYHIPTEQLKWSNIFGIMEDAKQKLGISDYSLGQTSLEQVFLYFTKTQRI
SDKKDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 37 | g13175.t1 | CDD | cd03263 | ABC_subfamily_A | 517 | 735 | 2.1061E-106 |
| 36 | g13175.t1 | CDD | cd03263 | ABC_subfamily_A | 1362 | 1580 | 1.66813E-101 |
| 9 | g13175.t1 | Gene3D | G3DSA:3.40.50.300 | - | 508 | 743 | 7.3E-65 |
| 10 | g13175.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1351 | 1592 | 1.9E-56 |
| 5 | g13175.t1 | PANTHER | PTHR19229:SF139 | ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 14 | 7 | 1679 | 0.0 |
| 6 | g13175.t1 | PANTHER | PTHR19229 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA | 7 | 1679 | 0.0 |
| 1 | g13175.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 28 | 460 | 1.2E-14 |
| 4 | g13175.t1 | Pfam | PF00005 | ABC transporter | 533 | 676 | 4.0E-28 |
| 2 | g13175.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 886 | 1307 | 1.1E-36 |
| 3 | g13175.t1 | Pfam | PF00005 | ABC transporter | 1379 | 1521 | 9.5E-21 |
| 14 | g13175.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 27 | - |
| 26 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 28 | 48 | - |
| 20 | g13175.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 49 | 250 | - |
| 29 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 251 | 274 | - |
| 16 | g13175.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 275 | 294 | - |
| 30 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 295 | 317 | - |
| 19 | g13175.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 318 | 336 | - |
| 25 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 337 | 356 | - |
| 12 | g13175.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 357 | 362 | - |
| 32 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 363 | 383 | - |
| 22 | g13175.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 384 | 440 | - |
| 35 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 441 | 462 | - |
| 11 | g13175.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 463 | 883 | - |
| 28 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 884 | 904 | - |
| 21 | g13175.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 905 | 1056 | - |
| 31 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1057 | 1077 | - |
| 15 | g13175.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1078 | 1096 | - |
| 34 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1097 | 1120 | - |
| 23 | g13175.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1121 | 1139 | - |
| 33 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1140 | 1160 | - |
| 17 | g13175.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1161 | 1166 | - |
| 27 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1167 | 1188 | - |
| 18 | g13175.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1189 | 1287 | - |
| 24 | g13175.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1288 | 1309 | - |
| 13 | g13175.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1310 | 1686 | - |
| 50 | g13175.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 649 | 663 | - |
| 53 | g13175.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 517 | 747 | 21.162 |
| 54 | g13175.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1362 | 1592 | 18.414 |
| 51 | g13175.t1 | SMART | SM00382 | AAA_5 | 541 | 725 | 1.0E-7 |
| 52 | g13175.t1 | SMART | SM00382 | AAA_5 | 1386 | 1569 | 0.12 |
| 7 | g13175.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 510 | 742 | 4.69E-57 |
| 8 | g13175.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1362 | 1583 | 1.05E-48 |
| 38 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 244 | 266 | - |
| 47 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 295 | 317 | - |
| 42 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 337 | 359 | - |
| 48 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 366 | 383 | - |
| 41 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 439 | 461 | - |
| 43 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 881 | 903 | - |
| 45 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1053 | 1075 | - |
| 49 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1096 | 1118 | - |
| 40 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1138 | 1160 | - |
| 46 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1167 | 1189 | - |
| 44 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1204 | 1223 | - |
| 39 | g13175.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1287 | 1309 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05643 (ATP-binding cassette, subfamily A (ABC1), member 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
