Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13182 g13182.t1 isoform g13182.t1 28359213 28360423
chr_1 g13182 g13182.t1 exon g13182.t1.exon1 28359213 28359233
chr_1 g13182 g13182.t1 cds g13182.t1.CDS1 28359213 28359233
chr_1 g13182 g13182.t1 exon g13182.t1.exon2 28359299 28360423
chr_1 g13182 g13182.t1 cds g13182.t1.CDS2 28359299 28360423
chr_1 g13182 g13182.t1 TSS g13182.t1 NA NA
chr_1 g13182 g13182.t1 TTS g13182.t1 NA NA

Sequences

>g13182.t1 Gene=g13182 Length=1146
ATGGTCCATCCAAATCGGAAAATAGTCCAGGAGCGCCCAGATCAAGAAGAACGCCAAATC
GATAGACGTCCTCCACCATTAGACCGCATTGTGTTGCAAGTACCTCCTGGATACAAAATT
CCAAAGATTTCACCTCAGGTTCGCGATTCATATAATCCTCCTCCATCGGAGCCACAAGAC
AGTAGCAGCAGCCTATATGGTCATTCTTCACGACAACATGCTCACTCAACGGTGACTCGT
CGGCACTACGACCACTCGCGGTCGCCACGTTATCATCGTGGACGTTCTCGCTCACCTCGT
CGTCATAAGCATTCCTCGTCTCCTGATAGACGTCGTGAAATTCATTCTTCATCTAATCGG
CATCGTCGTCGTTCATCGTCTTCACCGAGAAGATCCCGGCGAGACTATTCACTTGAACGC
TATCGACGTCAGTCCACTGATCGTCGCAAAAATTCCATTCGTCGTTCTCCATCTTGTAAC
CGTCGAGTGCAATTCGCTCCAGCCGCCAAAGAGATGGAAGTTTCGCCTCAACGCACTTGT
CGTAGTTCGCCAAATCGTCATCGTCGCTTACCTTCACGATCCAGAAGCGCTCGACGACGT
CATTCGTCACCGCCAGCTGTGCCAGAACAGCCACGACCACTATCATTAGCTGAACGACTC
GGGCCTCAAATTCAACAGCCTCCAAAACAAAATCGCACTGTCCAAGAGCGTAATCCGAGC
GTGCTTAAGTTTGAAAACGTCCCGACAGACGTTAACTTGTGCACTTTCCTCACTCTGTTG
TCACGAACACTTCGCAGTGTCCTCGGAGCCACCAGAGAATATGATTATAGCACCAAAACT
CCAGGAACAGCAGTCTTTATTTATTTATATGACCAAGATGAAGTAGATTATGCCGCAATG
CACGCATTATCATTTGAATTCGAATCTGGACATCAGGACATTCGACCACTTCTACTCTCT
GCTACGATTACATCACTCCCAATTGCAGAAGTTGACGATCCATCGTCAAAAATCATTCCG
ACAGTGATGATTCGCAAAATGATTCCAACACAAATCCGCCAAGCTATAGCCTCTGCTATA
GACGCTGTGCAAATTATCACTTCCTTTGAAGCTCAAGTCACACACCGAAGAGGAGAAAGC
ATGTGA

>g13182.t1 Gene=g13182 Length=381
MVHPNRKIVQERPDQEERQIDRRPPPLDRIVLQVPPGYKIPKISPQVRDSYNPPPSEPQD
SSSSLYGHSSRQHAHSTVTRRHYDHSRSPRYHRGRSRSPRRHKHSSSPDRRREIHSSSNR
HRRRSSSSPRRSRRDYSLERYRRQSTDRRKNSIRRSPSCNRRVQFAPAAKEMEVSPQRTC
RSSPNRHRRLPSRSRSARRRHSSPPAVPEQPRPLSLAERLGPQIQQPPKQNRTVQERNPS
VLKFENVPTDVNLCTFLTLLSRTLRSVLGATREYDYSTKTPGTAVFIYLYDQDEVDYAAM
HALSFEFESGHQDIRPLLLSATITSLPIAEVDDPSSKIIPTVMIRKMIPTQIRQAIASAI
DAVQIITSFEAQVTHRRGESM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g13182.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 213 -
6 g13182.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 25 -
1 g13182.t1 MobiDBLite mobidb-lite consensus disorder prediction 49 73 -
4 g13182.t1 MobiDBLite mobidb-lite consensus disorder prediction 85 108 -
3 g13182.t1 MobiDBLite mobidb-lite consensus disorder prediction 130 154 -
2 g13182.t1 MobiDBLite mobidb-lite consensus disorder prediction 182 200 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed