General information for g13182.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13182 is located on chr_1: 28359213..28360423 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13182 | g13182.t2 | isoform | g13182.t2 | 28359038 | 28360423 |
| chr_1 | g13182 | g13182.t2 | exon | g13182.t2.exon1 | 28359038 | 28360423 |
| chr_1 | g13182 | g13182.t2 | cds | g13182.t2.CDS1 | 28359038 | 28360423 |
| chr_1 | g13182 | g13182.t2 | TSS | g13182.t2 | NA | NA |
| chr_1 | g13182 | g13182.t2 | TTS | g13182.t2 | NA | NA |
Sequences
>g13182.t2 Gene=g13182 Length=1386
ATGGTCCATCCAAATCGGAAAATAGTCCAGGAGCGCCCAGATCAAGAAGAACGCCAAATC
GATAGACGTCCTCCACCATTAGACCGCATTGTGTTGCAAGTACCTCCTGGATACAAAATT
CCAAAGATTTCACCTCAGGTTCGCGATTCATATAATCCTCCTCCATCGGAGCCACAAGAC
AGTAGCAGCAGCCTATATGGTCATTCTTCACGACAACATGCTCACTCAACGGTGACTCGT
CGGCACTACGACCACTCGCGGTCGCCACGTTATCATCGTGGACGTTCTCGCTCACCTCGT
CGTCATAAGCATTCCTCGTCTCCTGATAGACGTCGTGAAATTCATTCTTCATCTAATCGG
CATCGTCGTCGTTCATCGTCTTCACCGAGAAGATCCCGGCGAGACTATTCACTTGAACGC
TATCGACGTCAGTCCACTGATCGTCGCAAAAATTCCATTCGTCGTTCTCCATCTTGTAAC
CGTCGAGTGCAATTCGCTCCAGCCGCCAAAGAGATGGAAGTTTCGCCTCAACGCACTTGT
CGTAGTTCGCCAAATCGTCATCGTCGCTTACCTTCACGATCCAGAAGCGCTCGACGACGT
CATTCGTCACCGCCAGCTGTGCCAGAACAGCCACGACCACTATCATTAGCTGAACGACTC
GGGCCTCAAATTCAACAGCCTCCAAAACAAAATCGCACTGTCCAAGAGCGTAATCCGAGC
GTGCTTAAGTTTGAAAACGTCCCGACAGACGTTAACTTGTGCACTTTCCTCACTCTGTTG
TCACGAACACTTCGCAGTGTCCTCGGAGCCACCAGAGAATATGATTATAGCACCAAAACT
CCAGGAACAGCAGTCTTTATTTATTTATATGACCAAGATGAAGTAGATTATGCCGCAATG
CACGCATTATCATTTGAATTCGAATCTGGACATCAGGACATTCGACCACTTCTACTCTCT
GCTACGATTACATCACTCCCAATTGCAGAAGTTGACGATCCATCGTCAAAAATCATTCCG
ACAGTGATGATTCGCAAAATGATTCCAACACAAATCCGCCAAGCTATAGCCTCTGCTATA
GACGCTGTGCAAATTATCACTTCCTTTGAAGCTCAAGTCACACACGTTCGTTTGCCAGGA
GAAGCGTCGGAATCCGCGAGAACATCATCACTTGCCTTTGTTGGAGTTAGCGAAGAGGAG
AAAGCATGTGAACTGGAAGGACTTAACTTTGAAAGATGTGGCAAAAAATTGCCGATTAAT
AAGAGCATTCAGATGCCCGTTTTAGTTCCTACAGGAATGATGAAACAAACCCGAGATGCA
GATTGGAATCGCCGCGCTCTTGCTAGCAACATGCTGATTCATCGTCCAAACCCCTTTGCA
GGATAG
>g13182.t2 Gene=g13182 Length=461
MVHPNRKIVQERPDQEERQIDRRPPPLDRIVLQVPPGYKIPKISPQVRDSYNPPPSEPQD
SSSSLYGHSSRQHAHSTVTRRHYDHSRSPRYHRGRSRSPRRHKHSSSPDRRREIHSSSNR
HRRRSSSSPRRSRRDYSLERYRRQSTDRRKNSIRRSPSCNRRVQFAPAAKEMEVSPQRTC
RSSPNRHRRLPSRSRSARRRHSSPPAVPEQPRPLSLAERLGPQIQQPPKQNRTVQERNPS
VLKFENVPTDVNLCTFLTLLSRTLRSVLGATREYDYSTKTPGTAVFIYLYDQDEVDYAAM
HALSFEFESGHQDIRPLLLSATITSLPIAEVDDPSSKIIPTVMIRKMIPTQIRQAIASAI
DAVQIITSFEAQVTHVRLPGEASESARTSSLAFVGVSEEEKACELEGLNFERCGKKLPIN
KSIQMPVLVPTGMMKQTRDADWNRRALASNMLIHRPNPFAG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 213 | - |
| 6 | g13182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - |
| 1 | g13182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 73 | - |
| 4 | g13182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 108 | - |
| 3 | g13182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 154 | - |
| 2 | g13182.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 200 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
